Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2202 ATGAACACCGCCTTCACCCTCTCCCTCAAAGTCCTACACAACAGCACAACCTTTCTCCCCAAATTCACATACACCACAACCACCCTCACCCTCACCCTCACCCTCACCCACCCACTCCCTCTCTCTTCCCTGCAATGCGGAACCTTGCTTCAGTCCCTCACAAACTCCAAGTCCCTCTCCCAAGCCCAACAGCTCCACGCCCACGTCATCACCTGCGGCACCCTCCTCCACAACACCTACCTCTCCACGAAGCTCGCCGCATGCTACGCCTCATGCGGCGTCATGCCCCAGGCACAGCACATATTCGACCATGTCTTCTTAAAGAACTCGTTTTTGTGGAATTCCATGATAAGGGGTTACGCTTCTAACGGTTCTCCCTTGAGGTCCCTTGCTTTGTACCGTGAAATGCTGAGTTTTGGAAACAAGGGTGATAATTTCACGTACCCTTTTGTTCTCAAGGCCTGTGGTGACCTTTTGCTTTGTGATATTGGTAGAAAGGTTCATGCTTTGGTGCTGGTTAATGGGTTGGAGTCGGATATCTACGTGGGGAACTCGCTGGTTTCGATGTATGCCAAGTTTGGAGAAATGGGTATTGCGAGGTTGGTGTTTGATAAAATGCCTGTCAAGGATTTGAGCTCTTGGAATTCTGTGATGTCAGGGTATCTGAAGAACGGTGAGGCAATGCATGCTTTGGTGGTTTATGGTTGCATGAGAAGGGCTGGTGTTATTGGAGACGGGACTACTTTGCTTGCACTGTTGTGTGCTTGTGGTGATCTTATGGATTTGAATATGGGCAAAGCGATTCATGGTTATGTTGTTAGGAGTGGTGGTAGATTGTGTAATGAGTTTCTGATGAATTCCCTTATTGACATGTACTGCAACTGCGGTTTGGTGACTGGGGCAAAGAAGTTATTTGAAGGGTTGGAAGTTAAGGATGCTGTGTCGTGGAATTCTTTGATTTCTGGCTATGAACGGTGTGGCAATGCTTTCAAAGTCTTGGAGCTTTTCAGTCAAATGTTTATAGGAGGTGTGATTCCTGATGAGGTGACTGTTATTTCTGTTCTTGGGGCTTGTAATCGAGTCTCAGCCTTGCAATTGGGCTCATCTGTTCACTCGTATATTGTTAAAAGGGGTTTTGGTGTGAATACTGTTGTGGGAACTGCCCTTATTAGCATGTATGCTAACTGTGGAAGTTTACTTTGTGCATGTTGTGCTTTCGATGAGATGCCACAAAAAAACTTGGCTTCTTGGTCAGTTATGGTTACAGCATTTGGAACTCATGGGAGGGGAAGAGAGGCTATTTCTATTTTCAATGAAATGTTAGGTACAAATATTATTCTGGATGAGGGCGTGTTTACTTCAGTTTTATCAGCTTGTAGTCATTCCGGATTAGTGGATGAGGGCAAAGAAATTTTCTGTAAAATGACTAGAGACTACGATGTGGAGCCTGGACCCACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGAACTTAGATGAAGCATATGCAGTTATAAACAATATGAAATTGAAACCCGATGGGGATGTATGGACTTCTCTCCTTTCTGCTTGCAGATTACACCGCAATGTCAAGTTAGCTGAGATTGCAGCCGAGAAGCTTTTCGAAATGAATCCAAATGGTGTGAGCGCTTATGTTTGTCTTTCCAACATATATGCTGCTGAGAGACGGTGGAACGATGTTGAAAAGTTGAGGACATTGGTGGAAAAACGGAGATTGAGGAAACCACCTAGTTACAGCTTTGTTGAGCTAAATAAGATGGTTCATCAATTTTTTGTTGGAGATACATCCCACCAACAGTCAAATGATATTTATGCCAAATTGAAAGGCTTGAACGAGCAACTCAAGGAAGCTGGGTACAAGCCTGACACTAGTTCAGTTCTCTATGATGTTGAGGAAGAACTAAAGGAGAAGATGCTATGGGATCACAGTGAACGATTAGCACTTGCCTTTACTCTCATTAACACTGGTCCGGGGACCACAATCAGAATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCACACAGTATTGAAGATGATTTCTAAGCTGACAAGTCGAGAGATTATCATGCGAGACATCTGTAGGTTTCACCATTTTAGAGATGGAATATGCTCATGTGGTGGCTATTGGTGA 2163 0.4448 MNTAFTLSLKVLHNSTTFLPKFTYTTTTLTLTLTLTHPLPLSSLQCGTLLQSLTNSKSLSQAQQLHAHVITCGTLLHNTYLSTKLAACYASCGVMPQAQHIFDHVFLKNSFLWNSMIRGYASNGSPLRSLALYREMLSFGNKGDNFTYPFVLKACGDLLLCDIGRKVHALVLVNGLESDIYVGNSLVSMYAKFGEMGIARLVFDKMPVKDLSSWNSVMSGYLKNGEAMHALVVYGCMRRAGVIGDGTTLLALLCACGDLMDLNMGKAIHGYVVRSGGRLCNEFLMNSLIDMYCNCGLVTGAKKLFEGLEVKDAVSWNSLISGYERCGNAFKVLELFSQMFIGGVIPDEVTVISVLGACNRVSALQLGSSVHSYIVKRGFGVNTVVGTALISMYANCGSLLCACCAFDEMPQKNLASWSVMVTAFGTHGRGREAISIFNEMLGTNIILDEGVFTSVLSACSHSGLVDEGKEIFCKMTRDYDVEPGPTHYSCLVDLLGRAGNLDEAYAVINNMKLKPDGDVWTSLLSACRLHRNVKLAEIAAEKLFEMNPNGVSAYVCLSNIYAAERRWNDVEKLRTLVEKRRLRKPPSYSFVELNKMVHQFFVGDTSHQQSNDIYAKLKGLNEQLKEAGYKPDTSSVLYDVEEELKEKMLWDHSERLALAFTLINTGPGTTIRITKNLRVCGDCHTVLKMISKLTSREIIMRDICRFHHFRDGICSCGGYW* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2202 720 Gene3D Tetratricopeptide repeat domain 30 159 IPR011990 GO:0005515
Dod03g2202 720 Gene3D Tetratricopeptide repeat domain 160 266 IPR011990 GO:0005515
Dod03g2202 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Dod03g2202 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Dod03g2202 720 PANTHER - 125 694 - -
Dod03g2202 720 Pfam PPR repeat family 311 358 IPR002885 -
Dod03g2202 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 483 IPR002885 -
Dod03g2202 720 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
Dod03g2202 720 TIGRFAM PPR: pentatricopeptide repeat domain 213 242 IPR002885 -
Dod03g2202 720 TIGRFAM PPR: pentatricopeptide repeat domain 416 448 IPR002885 -
Dod03g2202 720 TIGRFAM PPR: pentatricopeptide repeat domain 488 512 IPR002885 -
Dod03g2202 720 TIGRFAM PPR: pentatricopeptide repeat domain 112 142 IPR002885 -
Dod03g2202 720 TIGRFAM PPR: pentatricopeptide repeat domain 451 483 IPR002885 -
Dod03g2202 720 Pfam DYW family of nucleic acid deaminases 628 720 IPR032867 GO:0008270
Dod03g2202 720 PANTHER - 49 132 - -
Dod03g2202 720 Pfam E motif 530 592 IPR046848 -
Dod03g2202 720 Pfam PPR repeat 285 308 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 213 242 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 451 477 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 184 209 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 416 441 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 112 140 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 387 413 IPR002885 -
Dod03g2202 720 Pfam PPR repeat 487 512 IPR002885 -
Dod03g2202 720 Gene3D Tetratricopeptide repeat domain 480 655 IPR011990 GO:0005515
Dod03g2202 720 Gene3D Tetratricopeptide repeat domain 267 361 IPR011990 GO:0005515
Dod03g2202 720 Gene3D Tetratricopeptide repeat domain 362 479 IPR011990 GO:0005515
Dod03g2202 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Dod03g2202 720 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 125 694 - -
Dod03g2202 720 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 49 132 - -
Dod03g2202 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2202 Dod-Chr3 51794392 51796554 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2202 97 720 Glycoside Hydrolase AT3G49170 37.125 2.91e-138 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2202 - - gmx:100817006 1100.12