Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g2197 ATGGAAACACGATCTGCAAAACGCAAAAAGATTGCTCAGACGATAGAGAGCGATGCAAAAATGGCCATTGATAGGATCAGTGATCTCCCTGATGCTGTCCTTCATCACATTCTTTTCCTCCTTCCCATCAAATGTGTAGCACAGATGAGTGTTCTTTCAAAGAGATGGAAGTTTCTTTGGACCACATTTCCAGACCTTGACTTCACCACCCTTAGCCCTTTTGCCATTTCTTCCAAAAGAAGGTTCAAGGCCACAACTCTCAACCCATTGGCCTCAACAAGAATGGATTTCATCACACAAGTTCTGTCCATCCGTGACAAGAACTCAGACATTAGGATCCTTTGCTTTCGTGCCCGCTTGAGCTTCTCAAGGCTAAATAGCTTGATCCGTAGTGCCATTAAGCACAATGTTAGGGAACTTGATGTTGAAGTAGCCACAGAAGTGGTCACTGATGATTACTTCAACTTCCCAAGATGTGTCATTGGGAGTGAGTCTTTGAGGGTCTTGAAATTGAAGTCAGGTTTTCGTTTGCCCCCATCATCTATTTTGAGGGATGGTTTCCAATCTCTACAAACCTTGTCTCTTTCCCTAGTCATTTTGTACAATCAACCCTTTCTCTCTGATTTGTTCTCTGATTCATCTTTTCCTCTCTTGAAAAATTTGCACCTTGATATGTGCTTTGGGTTGAAATACTTACACGTTGGTTGCCGGGCACTAGAAGATTTTAGCTTAGAGAAATGTTTTCAGCTACAAGGTTTGGATATCTCATGTGCAAAGCTAGAGAGAATGAGAGTGGCAAGTTGTTTTGATGCCTATAGTGACAAGAGTTGGGTGAGGATCAATGCACCAAAGCTTCAACACTTGTTTTGGCAATATAATGCGGTCACTGACATGACTATTTTTGAGCAATCGAATTCCTTGGGTGAAGCCTCCATTGGTTTCTTCGTGCTTGGTGAAGATATTACTATTGGTAAGCTTCAAAGTGTCAGTAGTTTCTTGTCTGGACTCTCTCATGCTCGTTCCTTGACTCTTGAAAGCCAAACCATTGAGGTTCTATCAAACAATAACTTCTTTGTTCAGCCATTTCATAACCTTAAATCATTAGAGCTGCACACTGGTTTCAACAAAAGTAATGTTCAAGGATTAGCATGTCTATTCAGGAGCTCTCCTACACTCCACACTCTGATTCTCAAGATCATTAATGATTATAAGATTGAAAGAAAACAATGGAATAGGGACTTGTGGGACATGACTAGCACAGAGGAAGAGCAGTATTGGGAATCTCAGATAACAACACTCATGTCTTTTCTACAACACTTGAAAGTGGTGAAAATCGATGGGTTTCTGGATTGTGAGAACGAAGTTACACTTGCAAAGTTTCTCCTCAAGCATGGGAAGGCCTTAGAGGAAATGATACTAAGTGTGGGACATTGTACTTCTAGAGACACTCTAAGACGGCAAAAAATAAGGTCACAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTGGCATTTCAGTAG 1527 0.4106 METRSAKRKKIAQTIESDAKMAIDRISDLPDAVLHHILFLLPIKCVAQMSVLSKRWKFLWTTFPDLDFTTLSPFAISSKRRFKATTLNPLASTRMDFITQVLSIRDKNSDIRILCFRARLSFSRLNSLIRSAIKHNVRELDVEVATEVVTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSILRDGFQSLQTLSLSLVILYNQPFLSDLFSDSSFPLLKNLHLDMCFGLKYLHVGCRALEDFSLEKCFQLQGLDISCAKLERMRVASCFDAYSDKSWVRINAPKLQHLFWQYNAVTDMTIFEQSNSLGEASIGFFVLGEDITIGKLQSVSSFLSGLSHARSLTLESQTIEVLSNNNFFVQPFHNLKSLELHTGFNKSNVQGLACLFRSSPTLHTLILKIINDYKIERKQWNRDLWDMTSTEEEQYWESQITTLMSFLQHLKVVKIDGFLDCENEVTLAKFLLKHGKALEEMILSVGHCTSRDTLRRQKIRSQMMGFSWASSNAKVAFQ* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g2197 508 Pfam F-box domain 26 61 IPR001810 GO:0005515
Dod03g2197 508 SUPERFAMILY F-box domain 22 66 IPR036047 GO:0005515
Dod03g2197 508 Gene3D Ribonuclease Inhibitor 88 310 IPR032675 -
Dod03g2197 508 SUPERFAMILY RNI-like 157 443 - -
Dod03g2197 508 SMART 9598neu4hmm 434 508 IPR006566 -
Dod03g2197 508 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Dod03g2197 508 PANTHER F-BOX PROTEIN-LIKE 22 453 - -
Dod03g2197 508 Gene3D - 6 63 - -
Dod03g2197 508 Pfam FBD 436 473 IPR006566 -
Dod03g2197 508 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 22 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g2197 Dod-Chr3 51671459 51676005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g2197 8 454 EF-hand Containing Proteins AT5G41840 24.082 5.44e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g2197 - - ahf:114927451 823.542