Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1955 ATGCGCGCCTCCACCGTAAGAAACTTATGCACCCTCAGCACCCTATTCCGTTCCCATGCAACACGCAAAGCCAAGGCCCTTGCGTCCTGCTCTTCCATTTCCGAACACAATGCTTCTGAGCTCAGCCTCTCCGCCATCGACCTCAACCGTGACCCTCCGCCAGAGGATTCGCCTGATGTTGACAACGTGTCTACGCAGCTTTCTTCTATATTGCACTTTCCATTGCCGGTACAGGTACAGAAACCTGATCTTGTGGAAGTTGACAATGACGAAGAAGAAGAAGGGATTAGGGTACTAGATATACCATGGTTTCCAGACCTGTCTCATGGTGATATTTCGCTTAAACGGAAGGAGGCATCCCGTGAGAGGAAACAGAAATGGATTTTTAAGTACACGAGCAATGACCGTTTTGGTAGGTTAGTTAAAACGTGTGCAAAAAAGTTAGGAACGGGGGCTACCATTGATGTGTTTGGTCAGCTGGGTCGAGACACAGGTGTCAAAGAGTTCAATGCATTGATAAAGATGTGCATAAAAAAGGCGAGGGCAACCGATGATGAATATGTTTCTATAGAAGAAATGAGCAAGGCCTTCCACCTTTTCAAAAAGATGAGGGAGCGTGGTTTTCAGCTAGAAGAGCAAACATATCACCCACTTCTTAGGTATGTAATTGACATGGGTTTGGTTCAAGAATTTCAACTTTTTGCTGATGTGATCAGAGCCGAGAATCCCCGTTCAACTTCACGATTGGGATATTATGAAATGTTGTTGTGGATAAGAGTTAACAATGAAGAAATGATTCGGGATATTTGTGAGTATATTACAGTTGAAGATAGCAAAGACACTGCTGCTATACGAGAAAGTTACTTATTGGCTCTTTGTGAAAGTGATCGGAAGATACAGATTTTGGATGTGTTGAAAAATATAGACATAGCAAAGCTTTCATCTGCAAAATCTATAGCAAGTATATTCCAATCATTAGGCAGGCTACTGCTGGATTCTCTTGCGGAGAGTTTACTTTTGGATTTGAGAGCATGTGATCATGATGAAGATGATATTTCAAACTTCATTGCTAATTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCATCTCAAAAATCAAGAATTTGCACGAACTATTGGAAGTTTTGCCTTCGTCCTCATCATATGAAAAACTCATTTTGTATTGCTGTGACACAAGGAAGGTGGATAGAGCTCTTGATCTTGTTGAAAAAATGTGTGAAGCTGGCTTTATGTTGTCAACAGAGGTGCTACAGTCCATATTACACATTTGTGAGGAAACCTATGAATATATTTTGGTTCACCGAATCTATTCCATCATACATCGGTTCAATTTGGAGTTGAATGGTGAAATATGCAGGTGTTTGGTACAATTTTGCGTGAGGATGAAGGATTTTGAACGTGCATACAAGATGATTGATGACTTGGAGGAAACGAATTTCAAACCTACCACGGGCATGTACAATGCCATAATGGCAGGGTATTTTCGAGAGAGAAACATCAATGGTGCTTTGAGAGTCCTCAAGCACATGCAAGATGCAAACGTAAAACCTGATTCACAGACTTTCAGCTATTTGATTAGCAACTGTGAAAAGGAAGAGGATATCAACAAGTATTGTGAAGAAATGAAGCAATCTGGAATCCAAGCTTCAAAGCAAATTTATATGGCCCTTATTAATTCATATGCAGCTTGTGGCAAGTTGGAAATGGCAAAACAGGTACTTTTGGATCCAAACATACCGATTAAAAGCTTACATGAAATCAAGAGTGTCCTTGTCTCAGCTCTTGCATCTCATGGGCAATTGTCTGAGGCACTTCTTATATATGAGGAGATTATTAAAGCTGGACATAATTTGGAACCAAAAGCTGTTATAAGTCTCATTGAGGAGTTTGCTAAATTTTATGGGGAGTTAGATGGGATGCTCCTGCTACTTGCAGAATTGAGTGATCTAGACTATTGGGTTGATGGTTGCTTCAGAGTTATCATGTATTGTGTTCAAACCAAGAATCTAAGTTCTGCTATTGAGTTGTTCAAGCAACTCAAGGACAAGTTCGAAAGTGATGAACTAGTAATGGAAGCTCTCTTTGATGCAGCATTTTCTGTAATTGCAGCATCTGAGTGCACACATTTGCAGATTGGCCTGGACTTGCTTTGGGCTATCAAGGATGAGCTAGGTCTTGTGCCTTCACGGCAATGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATCTGAATAATGCTCGTTTGATTTGGAGAGAATACGAGGTTGCTGGATTTCCTTACAATGTGTTAAGTTATTTGAGGATGTATCAGGCACTTTTGGCATCAGGAGATTATAGATCTGCTAACTTTATGCTTAATAAAATCCCAAAAGACGATGCTGAGGTTTGTTCTGTCATCAAAGCATGTCAAGATACATACTGTTCTGTTCTTAACTCTGTAGGAAAGAAGAAAAAGAAAGGAAAGAAAAAGAAAGAAAAGAGCGAGGCTTGA 2526 0.4034 MRASTVRNLCTLSTLFRSHATRKAKALASCSSISEHNASELSLSAIDLNRDPPPEDSPDVDNVSTQLSSILHFPLPVQVQKPDLVEVDNDEEEEGIRVLDIPWFPDLSHGDISLKRKEASRERKQKWIFKYTSNDRFGRLVKTCAKKLGTGATIDVFGQLGRDTGVKEFNALIKMCIKKARATDDEYVSIEEMSKAFHLFKKMRERGFQLEEQTYHPLLRYVIDMGLVQEFQLFADVIRAENPRSTSRLGYYEMLLWIRVNNEEMIRDICEYITVEDSKDTAAIRESYLLALCESDRKIQILDVLKNIDIAKLSSAKSIASIFQSLGRLLLDSLAESLLLDLRACDHDEDDISNFIANYAVSIPNLAVEDIISKIKNLHELLEVLPSSSSYEKLILYCCDTRKVDRALDLVEKMCEAGFMLSTEVLQSILHICEETYEYILVHRIYSIIHRFNLELNGEICRCLVQFCVRMKDFERAYKMIDDLEETNFKPTTGMYNAIMAGYFRERNINGALRVLKHMQDANVKPDSQTFSYLISNCEKEEDINKYCEEMKQSGIQASKQIYMALINSYAACGKLEMAKQVLLDPNIPIKSLHEIKSVLVSALASHGQLSEALLIYEEIIKAGHNLEPKAVISLIEEFAKFYGELDGMLLLLAELSDLDYWVDGCFRVIMYCVQTKNLSSAIELFKQLKDKFESDELVMEALFDAAFSVIAASECTHLQIGLDLLWAIKDELGLVPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDYRSANFMLNKIPKDDAEVCSVIKACQDTYCSVLNSVGKKKKKGKKKKEKSEA* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1955 841 Gene3D Tetratricopeptide repeat domain 545 665 IPR011990 GO:0005515
Dod03g1955 841 Gene3D Tetratricopeptide repeat domain 667 841 IPR011990 GO:0005515
Dod03g1955 841 Pfam PPR repeat 599 624 IPR002885 -
Dod03g1955 841 Pfam PPR repeat 187 208 IPR002885 -
Dod03g1955 841 Pfam PPR repeat 563 583 IPR002885 -
Dod03g1955 841 Pfam Pentacotripeptide-repeat region of PRORP 389 538 IPR033443 -
Dod03g1955 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Dod03g1955 841 PANTHER OS02G0132600 PROTEIN 7 837 - -
Dod03g1955 841 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Dod03g1955 841 Gene3D Tetratricopeptide repeat domain 113 247 IPR011990 GO:0005515
Dod03g1955 841 Gene3D Tetratricopeptide repeat domain 367 441 IPR011990 GO:0005515
Dod03g1955 841 Gene3D Tetratricopeptide repeat domain 442 544 IPR011990 GO:0005515
Dod03g1955 841 PANTHER OS02G0132600 PROTEIN 7 837 - -
Dod03g1955 841 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1955 Dod-Chr3 43963362 43992794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1955 389 830 Glycosyltransferase AT1G05670 20.217 2.73e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1955 - - cam:101502375 1179.47