Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1890 ATGTCGTTCTCTCTCTCTTCCTCATCCTTTGCCGTTTCCCTCGCTCACGACCCATCTTCACCTTTCTTTGCCAGCAGCACCACCCTTTCCTGCTTCCATCGCACCAGGCCCTTCCTACACCAAACCCAAACACCATCCTCTTACACTGTCACTTGCTTCTCAAAGAACCACCTCACGAGGGCTACTAACCTATCAAAGGAACTGGCGGGCCAGCATGACGCGTCAGCAGCTAGTGTTAATCAGAGAATGAAGCAATTGAAGAATTTGATTCCTGCCATTGTTGTCTCCGTTCAGATTACGTTTTTGCTTCCTCTGGTTGGATCGTGGGATTCATGGTCGTATACATCACCTGCTGCCAGGGCGGTTCTGTATTCACCGGATACTAAGGTTCCCAGAACGGGAGAAGTTGCTTTGAGAAGGGCTATCCCTGCAAATGCTAACATGAAGGCTATACAGGACACTCTGGAAGATATTTCATACCTGTTGAGGATTCCACAGAGGAAACCTTATGGAACAATGGAAGGGAATGTGAAGAAAGCGTTGAAGATATCAGTAGATGAAAAGGATTCTATACTGGCCAGTATACCTGCAGAACTGAAGGATAAGGGCTCTTTGGTACATGCAACTCTAATAGATGGAAAGGGTGGATTGCAAGCACTCCTTCAATCTATAAAGGAACAGGATGCAGACAAAGTATCTTTGAACCTTGCATCTGCTCTTGATACTGTAGCAGAGCTAGAGTTGTTACAGGCACCGGGATTATCATTTTTGTTGCCAGAGCAATACATGCAATATCCACGGCTTTCAGGGAGAGGAACTGTTGAGTTCACCATCGAGAAAGGAGATGGTTCAACATTTTCTCCAACTGGTGGTGAACAAAGAAAAACTGCCACCATTCAGGTTGTTATAGATGGATACTCTGCTCCATTAACTGCAGGGAATTTCGTAAAACTGGTGATGGATGGAGCATATGATGGCGTAAAGCTCAGCTGTTCCAACCAAGCTATTCTATCTGATAATGGACTCGATAAGAACAGTGGTTACAGTGTTCCCTTGGAAATTATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTTCCAGTTCTTCCTCTATCTGTTTATGGGGCAGTCGCTATGGCACATAATGAAGTCTCTGATGAGTATTCATCACCTTATCAGTTCTTCTTCTATCTCTATGATAAACGTAGTGCCGGCTTGGGAGGAATATCATTTGATGAGGGGCAATTTTCAGTTTTTGGATACGCAACCACTGGGAGAGATATCCTCCGCCAGATAAAAACTGGTGATATTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGCCTTGTATTACCGAAGGAAAGCTGA 1398 0.4478 MSFSLSSSSFAVSLAHDPSSPFFASSTTLSCFHRTRPFLHQTQTPSSYTVTCFSKNHLTRATNLSKELAGQHDASAASVNQRMKQLKNLIPAIVVSVQITFLLPLVGSWDSWSYTSPAARAVLYSPDTKVPRTGEVALRRAIPANANMKAIQDTLEDISYLLRIPQRKPYGTMEGNVKKALKISVDEKDSILASIPAELKDKGSLVHATLIDGKGGLQALLQSIKEQDADKVSLNLASALDTVAELELLQAPGLSFLLPEQYMQYPRLSGRGTVEFTIEKGDGSTFSPTGGEQRKTATIQVVIDGYSAPLTAGNFVKLVMDGAYDGVKLSCSNQAILSDNGLDKNSGYSVPLEIMPSGQFEPLYKTTLSVQDGELPVLPLSVYGAVAMAHNEVSDEYSSPYQFFFYLYDKRSAGLGGISFDEGQFSVFGYATTGRDILRQIKTGDIIRSAKLIEGQDRLVLPKES* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1890 465 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP37, CHLOROPLASTIC 1 464 IPR044259 -
Dod03g1890 465 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 298 446 IPR002130 GO:0000413|GO:0003755
Dod03g1890 465 Gene3D - 144 249 IPR023222 -
Dod03g1890 465 Gene3D - 292 456 IPR029000 -
Dod03g1890 465 SUPERFAMILY Cyclophilin-like 298 449 IPR029000 -
Dod03g1890 465 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 286 442 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1890 Dod-Chr3 39852095 39892227 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1890 - - aip:107630088 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1890 03 39852095 39892227 Dod03g1890 03 39852095 39892227 ECH