Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1683 ATGAATTTCAGGTTCCAGAACCTTCTTGGAGCTCCTTACAGAGGAGGCAACGCCGTAGTCTCCAACAACACACTGCTAATCTCACCCGTCGGTAACCGAGTCGCCGTCACCGATCTCCTCAAGTCCCAGACCACAACACTCCCTTCCCAGTCCTCCTCCAACGTCTCCCGCATCGCCGTGTCCCCCGACGGCACCTTCCTCCTCGCCGTCGACGACCGCAACCGCTGCCTCTTCATCAACCTCCGGCGCCGCGCCGTCCTCCACCGCATCTCCTTCAAGCACCGCGTCGCCGCCGCCAAGTTCAGCCCCGATGGCGCTCTCATCGCCGTCGCCGCCGGCAAGCTCGTCCAGATTTGGCGCTCCCCTGGGTTCCGCAAGGAGTACTTCCCCTTTGAGCTTCTCCGCACTTTCGCCGATTTCGCCGGCAAGGTCACCTCGCTGGATTGGAGCCCCGACTCCAATTACCTGCTCGCAGGGTCCAAGGACCTCACCACGAGAATCTTGTACCTCAAGAAATCGAAAGTTGCGTTGAATTATAGGCCTTTCTTGTTCTTGGGGCACAGGGATTCGGTTGTTGGTTCGTTCTTCGGCGTTGATTCGAAAACTAGTAGGGTTTATAAGGCTTATACGATTGCTAGGGATGGGTTTTTGTTTAGCTGGGGTTTTACTAGCGATGATGGAGGTGTTGATGCGATGGATGTGGAGGGATCGGAGCCGGCATCTCCGGGGACGCCGGAGAGGGACTTGGAGGGGAATTTGGGGAGTGTTGCTGGTGGTGATGATGGTGGTGTGAGGAAGATAAAGCAATGTGATGATGAGGTTGGTGATGAGGAAGAGTACTTGTGCAGAGGGAAGTGGGAGTTGTTGAGGAAGGATTTTTTCGGGCAGGCACCGGCGAAGGTAACGGCGTGCGATTACCATAGAGGGCTGGACATGGTGGTTATTGGGTTCTCGAATGGTGTGTTTGGGCTGTATCAGATGCCTGATTTCGTGTGCCTTCACATGTTGTCTATATCTAGGGAGAAGATCACAACGGCGGTGTTCAATGAGCTTGGAAACTGGTTAACCTTTGGCTGCGCGAAGCTGGGGCAGTTGCTCGTGTGGGAGTGGCGGTCTGAGAGCTACATTTTGAAGCAGCAGGGTCACTACTTTGATGTGAATTGCCTCGCTTATTCACCTGACTCGCAACTCCTTGCTACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACTGTCTCCTCTGGCTTTTGCTTTGTTACATTTTCTGAGCACACTAATGCTATTACTGCTCTACATTTTATGGCAAGCAATAATTGTCTGCTTAGTGCATCTCTTGATGGGACTGTTCGTGCGTGGGATTTATTACGTTATCGAAATTTTAGGACATTTACTAGCCCGTCTTCTAGGCAGTTTGTTTCTCTGGCAGCAGATCAAAGTGGTGAAGTGATATGTGCTGGCACTAGAGATTATTTTGAGATTTTTGTTTGGTCAATGAGAACGGGCCGTTTGTTGGATGTGCTTAGCGGTCATGAGGGTCCTGTTCATGGGTTGATGTTTTCTCCTACAAATACTATATTGGCTTCATCATCATGGGACAAAACTGTTTGGTTGTGGGATGTTTTTGATGGAAAAGGAGCAGTTGAAACATTTCCTCACACACATGATGTTCTTTGTGTAGTTTATCGTCCTGACGGAAGGCAGTTAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGACCCAATAGAAGGTTTGCTGATGTACACCATAGAGGGCTCTAGAGATATTGCTGGAGGCCGCCTTATGACTGACCGTAGAACAGCTGCTAACTCAAGTTCAGGGAAGTACTTCACAACCTTATGCTATTCAGCTGATGGAAGCTACATATTAGCTGGGGGCATTAGCAGATATATCTGCATGTATGATGTTGCAGATCAGGTGTTGCTGCGACGTTTCCAGATAACACTCAATCTGTCATTAGATGGAGTGCTTGACTTCTTAAACTCAAAAAATATGACAGAAGCTGGCCCACTGGATTTGATTGATGATGATAACAGTGACATTGAAGAAGGAATTGACAAACAAACAAGGGGGAATATAGGATTTGATTTACCAGGATCTCTGCCTAACCGTGGAAGGCCCATTATTCGAACAAAATCCCTAAGAATTGCACCAACAGGACGGAGTTTTGTAGCAGCAACAACTGAGGGAGTTTTAGTTTATTCTGTTGATGAATCGTTCATATTTGATCCAACTGACCTTGACATAAATGTTACACCAGAGGCTGTTGAGGAAGCTCTTAGTGAGAATCAACCAAGTAGAGCCTTGATCCTTAGCCTTCGCCTTAATGAGGACTCTTTCATAAAAAAATGCATTTTCGCTGTCAGTCCAGCAGATATTCCAGCAGTTGCCAGATCAATCCCTTCCAGATATCTACAGCGGTTAATTGAGGCACTTGCAGATCTTTTAGAAAACAGCCCACATTTGGAATTTGTACTCAGATGGAGTCAGGAGCTCTGCAAAGCGCATGGGAACCCTATTCAACAGAACTCTCGAAATCTGCTCCCATCATTAAAATCTTTGCAGAAAGCAATCACTAGAATACATCAAGATCTAGCTGATACATGCTCCTCCAATGAATATATGTTGCGATACTTATGCTCTTCAGGTGCCAAGGAATGA 2685 0.4771 MNFRFQNLLGAPYRGGNAVVSNNTLLISPVGNRVAVTDLLKSQTTTLPSQSSSNVSRIAVSPDGTFLLAVDDRNRCLFINLRRRAVLHRISFKHRVAAAKFSPDGALIAVAAGKLVQIWRSPGFRKEYFPFELLRTFADFAGKVTSLDWSPDSNYLLAGSKDLTTRILYLKKSKVALNYRPFLFLGHRDSVVGSFFGVDSKTSRVYKAYTIARDGFLFSWGFTSDDGGVDAMDVEGSEPASPGTPERDLEGNLGSVAGGDDGGVRKIKQCDDEVGDEEEYLCRGKWELLRKDFFGQAPAKVTACDYHRGLDMVVIGFSNGVFGLYQMPDFVCLHMLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFSEHTNAITALHFMASNNCLLSASLDGTVRAWDLLRYRNFRTFTSPSSRQFVSLAADQSGEVICAGTRDYFEIFVWSMRTGRLLDVLSGHEGPVHGLMFSPTNTILASSSWDKTVWLWDVFDGKGAVETFPHTHDVLCVVYRPDGRQLACSTLDGQIHFWDPIEGLLMYTIEGSRDIAGGRLMTDRRTAANSSSGKYFTTLCYSADGSYILAGGISRYICMYDVADQVLLRRFQITLNLSLDGVLDFLNSKNMTEAGPLDLIDDDNSDIEEGIDKQTRGNIGFDLPGSLPNRGRPIIRTKSLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEALSENQPSRALILSLRLNEDSFIKKCIFAVSPADIPAVARSIPSRYLQRLIEALADLLENSPHLEFVLRWSQELCKAHGNPIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGAKE* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 549 581 - -
Dod03g1683 894 SUPERFAMILY DPP6 N-terminal domain-like 20 259 - -
Dod03g1683 894 ProSitePatterns Trp-Asp (WD) repeats signature. 440 454 IPR019775 -
Dod03g1683 894 SUPERFAMILY WD40 repeat-like 128 585 IPR036322 GO:0005515
Dod03g1683 894 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 550 745 IPR011044 -
Dod03g1683 894 CDD WD40 332 634 - -
Dod03g1683 894 Pfam Dip2/Utp12 Family 784 889 IPR007148 -
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 549 581 IPR001680 GO:0005515
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 420 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 414 453 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 329 369 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 130 169 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 83 120 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 500 539 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 604 643 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 456 497 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 372 411 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 40 80 IPR001680 GO:0005515
Dod03g1683 894 SMART WD40_4 543 581 IPR001680 GO:0005515
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 421 454 - -
Dod03g1683 894 Pfam WD domain, G-beta repeat 502 539 IPR001680 GO:0005515
Dod03g1683 894 Pfam WD domain, G-beta repeat 380 410 IPR001680 GO:0005515
Dod03g1683 894 Pfam WD domain, G-beta repeat 133 167 IPR001680 GO:0005515
Dod03g1683 894 Pfam WD domain, G-beta repeat 553 581 IPR001680 GO:0005515
Dod03g1683 894 Pfam WD domain, G-beta repeat 417 453 IPR001680 GO:0005515
Dod03g1683 894 Gene3D - 19 243 IPR015943 GO:0005515
Dod03g1683 894 Gene3D - 285 477 IPR015943 GO:0005515
Dod03g1683 894 Gene3D - 478 675 IPR015943 GO:0005515
Dod03g1683 894 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Dod03g1683 894 PRINTS G protein beta WD-40 repeat signature 526 540 IPR020472 -
Dod03g1683 894 PRINTS G protein beta WD-40 repeat signature 398 412 IPR020472 -
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 548 IPR001680 GO:0005515
Dod03g1683 894 PANTHER WD40 REPEAT PROTEIN 1 890 IPR027145 -
Dod03g1683 894 ProSitePatterns Trp-Asp (WD) repeats signature. 526 540 IPR019775 -
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 379 415 - -
Dod03g1683 894 MobiDBLite consensus disorder prediction 231 256 - -
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 421 462 IPR001680 GO:0005515
Dod03g1683 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1683 Dod-Chr3 23882085 23893954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1683 478 654 Miscellaneous Gene Families AT5G08390 20.339 1.68e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1683 K14558 - gmx:100526905 1532.69