Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1495 ATGGAGACTCCTCCTTCATCTGGTGCTGCAGCGCAACAAGGTGGTGTGGTGAAGAAGAAGGAGACAAGGGGCAGAAAGCCCAAGCCCAAGGACGAAAACCAACAACATGGGAAGACCGCGAAGGAAGCGAAGAAGGCACAGCAGCAGCAGCAACAACAACAGCATTCGGTGGACGAGAAGTACAGCCAGTGGAAGTCCCTCGTCCCCGTTCTCTATGACTGGCTCGCCAACCACAACCTCACTGATGGCAGTGTTCCAAATACGCTGGTCATTGCTAATTGTGAGGTTGTCAAGCCTAGGGTTGCAGCTGCTGAGCACATTTCACAGTTTAATGAAGAGGCACGCTCCCCATTCGTCAAGAAGTACAAGACCATCATACATCCGGGAGAGGTGAACAGAATTAGGGAGTTGCCGCAAAACTCTAGGATAGTGGCTACTCATACAGACAGCCCTGATGTCCTTATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCCACAAACTCTCGTCCAGATTTGGTATTGACTGGGCACCAAGATAATGCAGAATTCGCCCTTGCAATGTGCCCAACTGAGCCCTATGTGCTTTCGGGAGGTTGGCATTCTTATTCACTATTTTTTAAAACAATCAGATCTTTAAAATCCTGCTCATTTCTTGATGTGGTTGTTGCAGGAAAGGACAAAACAGTGGTGCTGTGGAGTATTGAAGACCATATAACATCATCTGCCACAGACCCCAAATCAAGTGGGTCAATTATCAAACCAAACTCCAAATCCGGGGAAGGCAATGATAAACCTGCTGATGGACCTTCTGTTGGACCACGGGGTATCTACTGTGGCCATGAAGATACTGTTGAAGATGTGACTTTCTGTCCTTCTAGTGCACAGGAGTTCTGTAGCGTTGGAGATGATTCTTGTCTCATATTATGGGATGCCCGTGTTGGCTCTAGTCCTGTGGTTAAGGTCGAAAAGGCTCATAATGCTGATCTTCATTGTGTTGATTGGAATCCCCATGATGTTAATCTGATTCTAACTGGGTCGGCAGATAATTCTGTTCGCATGTTTGATCGACGCAATCTGACTTCTAATGGAGTTGGGTCACCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTAAACGTTTGGGACTATGAGAAGGTTGGAAAAAAGATAGAACGATCTGGAAAATCACTAAGTTCTCCACCAGGGCTGTTTTTCCAGCATGCAGGTCATAGGGACAAAGTAGTTGACTTTCACTGGAATGCACAAGATCCATGGACGATTGTTAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGAGGAACACTACAGATATGGCGCATGAGTGATTTGATCTACAGACCGGAAGAGGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGATAGCTTGTGCTTCAAAGTCCGAAAAATGA 1521 0.4602 METPPSSGAAAQQGGVVKKKETRGRKPKPKDENQQHGKTAKEAKKAQQQQQQQQHSVDEKYSQWKSLVPVLYDWLANHNLTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLVLTGHQDNAEFALAMCPTEPYVLSGGWHSYSLFFKTIRSLKSCSFLDVVVAGKDKTVVLWSIEDHITSSATDPKSSGSIIKPNSKSGEGNDKPADGPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDVNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNVWDYEKVGKKIERSGKSLSSPPGLFFQHAGHRDKVVDFHWNAQDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVIACASKSEK* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1495 506 MobiDBLite consensus disorder prediction 44 60 - -
Dod03g1495 506 Pfam WD domain, G-beta repeat 370 409 IPR001680 GO:0005515
Dod03g1495 506 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Dod03g1495 506 Pfam WD domain, G-beta repeat 328 360 IPR001680 GO:0005515
Dod03g1495 506 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 32 80 - -
Dod03g1495 506 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 81 209 - -
Dod03g1495 506 SUPERFAMILY WD40 repeat-like 117 500 IPR036322 GO:0005515
Dod03g1495 506 MobiDBLite consensus disorder prediction 1 60 - -
Dod03g1495 506 PANTHER WD40 REPEAT FAMILY 32 80 - -
Dod03g1495 506 MobiDBLite consensus disorder prediction 25 43 - -
Dod03g1495 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 360 IPR001680 GO:0005515
Dod03g1495 506 MobiDBLite consensus disorder prediction 245 262 - -
Dod03g1495 506 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 225 503 - -
Dod03g1495 506 Gene3D - 34 492 IPR015943 GO:0005515
Dod03g1495 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 324 IPR001680 GO:0005515
Dod03g1495 506 PANTHER WD40 REPEAT FAMILY 225 503 - -
Dod03g1495 506 PANTHER WD40 REPEAT FAMILY 81 209 - -
Dod03g1495 506 SMART WD40_4 427 474 IPR001680 GO:0005515
Dod03g1495 506 SMART WD40_4 118 157 IPR001680 GO:0005515
Dod03g1495 506 SMART WD40_4 275 315 IPR001680 GO:0005515
Dod03g1495 506 SMART WD40_4 369 409 IPR001680 GO:0005515
Dod03g1495 506 SMART WD40_4 320 360 IPR001680 GO:0005515
Dod03g1495 506 SMART WD40_4 172 212 IPR001680 GO:0005515
Dod03g1495 506 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 411 IPR001680 GO:0005515
Dod03g1495 506 MobiDBLite consensus disorder prediction 245 279 - -
Dod03g1495 506 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1495 Dod-Chr3 20005860 20012059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1495 284 469 Miscellaneous Gene Families AT5G08390 26.943 3.33e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1495 K10752 - gmx:100779302 864.374