LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod03g1490	ATGATGACAATTAGTAAGGTCCCAATTGGGTTCCTTCTCTTCATAGCCACCTTTGTGGTGAAGGTCTCAGCTGGTAACTTCTACCAAGACTTTGAGTTAACATGGGGTGATAACCGTGCCAAAATCCTTAACAATGGTCAGCTTCTCACACTATCCTTGGACAGGGCCTCTGGCTCTGGCTTTAGTTCCAAGAACGAGTACTTGTTTGGAAAAATTGACATGCAACTCAAGCTCGTTCCTGGCAACTCTGCTGGCACTGTTACAGCCTATTATCTGTCATCTTTGGGGTATGCTCATGACGAAATAGACTTTGAATTTCTGGGTAACTTGAGTGGTGATCCATATATTCTTCACACGAACGTATTCACCCAGGGCAAAGGGAACAGAGAGCAGCAGTTCTATCTATGGTTCGACCCCACACAGGACTTTCACACATACTCCGTTCTTTGGAATCCTCAAAGCATCATATTCTATGTGGACGGGACACCAATAAGGGGGTTCAAGAACTTAGAGTCAAAGGGGGTCCCATTTCCAAAGAACCAAGCCATGAGGATATACTCAAGCCTTTGGAACGCTGATGATTGGGCAACAAGGGGTGGACTAGTGAAGACAGATTGGAGCCAAGCCCCATTCACTGCCTCATACAGGAACTTCAATGCACAAGCTTGTGTTCGGACTTCTTCAGGCTCCTCTTGTTCTCCTTCATCAGGCCAATCATGGATGGGGCAATCACTGGATGCATCGGGCCAAGCCAGAATCCATTGGGTCCAAAAGAACTACATGATTTACAATTACTGCACTGATGCCAAACGCTTCCCACAAGGCCCCCCTCCTGAATGCTCACTTGCATGA	852	0.4671	MMTISKVPIGFLLFIATFVVKVSAGNFYQDFELTWGDNRAKILNNGQLLTLSLDRASGSGFSSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGYAHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTQDFHTYSVLWNPQSIIFYVDGTPIRGFKNLESKGVPFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRNFNAQACVRTSSGSSCSPSSGQSWMGQSLDASGQARIHWVQKNYMIYNYCTDAKRFPQGPPPECSLA*	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod03g1490	283	Gene3D	-	13	282	-	-
	Dod03g1490	283	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	21	215	IPR000757	GO:0004553\|GO:0005975
	Dod03g1490	283	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	11	282	-	-
	Dod03g1490	283	CDD	GH16_XET	23	280	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Dod03g1490	283	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	101	111	IPR008263	GO:0004553\|GO:0005975
	Dod03g1490	283	PRINTS	Glycosyl hydrolase family 16 signature	59	77	IPR008264	GO:0004553\|GO:0005975
	Dod03g1490	283	PRINTS	Glycosyl hydrolase family 16 signature	117	130	IPR008264	GO:0004553\|GO:0005975
	Dod03g1490	283	PRINTS	Glycosyl hydrolase family 16 signature	135	152	IPR008264	GO:0004553\|GO:0005975
	Dod03g1490	283	Pfam	Glycosyl hydrolases family 16	28	207	IPR000757	GO:0004553\|GO:0005975
	Dod03g1490	283	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	11	282	IPR044791	GO:0004553
	Dod03g1490	283	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	282	IPR013320	-
	Dod03g1490	283	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	236	280	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Dod03g1490	283	PIRSF	EndGlu_transf	1	283	IPR016455	GO:0010411\|GO:0016762\|GO:0042546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod03g1490	Dod-Chr3	19885342	19888235	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod03g1490	1	283	Glycoside Hydrolase	AT4G25810	70.732	2.45e-151	422

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod03g1490	K14504		K08235	gmx:100807063	483.411

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g2328	05	49557281	49558899	Dod03g1490	03	19885342	19888235	PCT