Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1439 ATGTTGTTCCTCCGCACAACTAGGCCCTTCTCTTCCTCTTGTTCATCATCATCTTGCAGCAGCAACAGCAGCTTCTTCTCACAGAACAACCACTCACTCCAAACCTTGCTCAAACGCGGGTTCACCCCAACCCTCAAATCCGTCAACCGCTTCCTCCTCTCCCTCCTCCGCCACCGCAAGTTCAACCTCATCGTCCACCTCACCAACACCACTCTCATCCCCTCCAACCACACCACCCTCTCCATCCTCACATGGGCACTCCTCAAATCCCAAAAGTTCCAAGAAGTCTCCTCGCACCTCATCAAAACCACCCACTTCACCACCAATTCCCACCTTATGTGGGACACCCTCATCCAGCGCCACCACGACCCGAATACTGCACTCTCCCTCCTCCAACACTGCATCCAAAGCGGTGCCGTTTTGCCCTCACCTTTCACCTTCTCCTCCCTCATCCGCAAGCTGTGCTCTAGTGGGGACATGGGAATGGCCCTTGAGGTGCTGGAGCTCATGGCTGATGATAGAGTCAGGTACCCTTTTGATGATTTTGTGTGTACCTCTGTTATCTCAGGGTTTTGTAGGATTGGGAAGCCTGAACTTGCTTTAGGGTTCTATGACAATGCTTTGTGTTCTGGTGGGGTATTGATGAGGCCCAATTTGCTCACTTTCACTGCCCTTGTGGGTGCACTTTGTAGACTGGGGAGGGTTGATGAGGTTTGTGGTTTGGTTAGAAAATTGGAGAATGATGGGTTGGGTTTGGATGTTGTTTTTTATAGCACTTGGGTTTGTGGGTATGTTGAAGGAAAGGACTTGGTTGAGGTTTTTAGGAAGATGGGGGAGATGGTGGAGAAGGGTATTGATCATGATGATGTTAGTTATACCATACTCATTGAGGGGTTTTCCAAATTGGGTGATGTGGAGAAGTCATTTGGGATCTTGGCTAAGATGATCAAGGAAGGGAAGAGACCCAATAAGGTCACTTACACTGCAATCATGTGTGCTTATTGTAAGAAGGGTAAAGTGGAGGAAGCATTTGCTGTTTTCGAGAAGATGGGGGAGTTGGGAATTGAGTTGGATGAGTTTGTGTTTGCCGTTTTGATTGATGGGTTTGGCCGAATTGGAGATTTCGATAGTATGTTTCGCCTGTTTGATGAAATGGAGAGGAGAGGGATTAGTCCTGGTGTTGTTACATATAATACGATTATAAATGGTTTGTGTAAGTTTGGGAGGACGTCTGAGGCAGATGAGTGGTCGAAAGATGTGGTTGCGGATGTGATTACGTACAGCACGTTGTTGCAGGGCTATACTGAAGAAGAGAACGTTCCAGGGATTTTGCAGATGAAGAGGCGACTAGAAGAAGCTGGAGTTGCTATGGATGTTGTAATGTGTAATGTGCTGATCAAAGCGCTGTTTATGATGGGGGCTTTTGAAGACGTTTATGCACTTTATAAAGGAATGCCCGAAATGGATCTGGTTCCAAATTCTGTTACATACTGCACAATGATTGATGGGTACTGCAAGGTAGGTAGAATTGATGAGGCGCTTGAGGTATTTGATGACTTCAGGAAGACATCAATCTCTTCACCTGCGTGCTACACTACCCTTATTAATGCCCTTTGCAAGGAGGGTATGGTAGCAATGGCCACTGAGGCATTACTTGAACTCAATCGAAAAGGTATGGAGTTTGATAGATTTACATATAGGATGTTAATGAGGACAATTTTCATAGACAAGGGTGCAAAAGGGGTTTTAGATTTAGTTGACAGAATGGAAGGTTTGGGGGCCGACATATATAATGCGGTATGTAACGATGCAGTCTTTTTATTATGCAAAAGAGGATTGCTTGAGGATGCATATCAATTGTGCATGATGATGAGAAAGAAGGGCTCATCTGTCACAAGCAAATCTTATTATTCAATTTTGAGAAGGTATCTTAGTAATGGGAATAGGGAGCAAATTCTGCCCCTCTTGATTAGCTTCTTGAAAGAATATGGCCTAGTTAATCCAATGGTGCAAAAGATACTTGCACGCTTCCTATGTCTGAATGATGTACATAGTGCCATTCGATTTCTTAGAAAAATAATGGGTAATTCTTCAGCAGTCACTTTACCTGTCTCCATTCTCAAGATTCTTGTAAAGGAGGGTAGAGCTTTAGATGCATATAAGCTTGTCATGGAGACTCAAGATTTTTTACCCGTCATGTATATTGATTATGCTATTGTAATCGATGGCTTATGCAAGGGAGGATATCTGAATAAAGCATTGGATCTTTGTTCCTTTGCTGAAAAGAAAGGGATCACTTTGGACATAGTCGTATATAATTCAACAATAAATGGATTGTGCCATGAGGGATGCCTGATTGAAGCATTTCGGCTATTTGATTCACTACAGAAACTTAATTTGATGCCCTCTGAAATAACTTATGCTACATTAATTTATGCTCTGTGTAGGGAGGGATATCTGCCAGATGCTGAGCATGTTTTTGGGAAAATGGTCCTCAAGGGCTTTCAACCAAAAACACAAGTTTACAATTCATTACTTGAAGGTTTTTCTAAGTTTGGTCAATTAGAGAAGGCATTCGAGCTTCTAACTGAAATGGAGACAAAACATATTGAGCCTGACAGTTTGACTGTTAGTGCTGTGATAAATTGCCATTGCCAGAAGGGCGACATGGAAGGAGCCCTTCAATTCTACTATAAGTTCAGGGGTAAGGATATATCACCTGATTTTTTGGGGTTCTTGTATTTGATAAGAGGTCTGTGTACCAAGGGAAGGATGGAAGAAGCAAGGAGTGTTTTGAGAGAAATGCTCCAGTACAAGAATGTTGCAGAGATAATTAACATAGTCAACAATGAGGTTGATACTGAGTCAGTAGGTGATTTTCTTGGCATTTTGTGCGAGCAAGGAAGCATTCAAGAAGCTGTTACAGTTCTCAATGAAATTGCAAGGACGCTTTTTCCTCTTCTAAGGTTGTCCACATATAATCAAGGATCCCATAAACAGCAGAGCATTTATGGAAGGAAGGATTCTGGTTCAGAATCTTCAAGCAATCTACCTTCCTCTTGCGAAAGTGGTTTGGCTCCTGGATCTTGTGATACCAGGGATGTAAGGAATCTTGCAATAAATAATGATAGTAATGAAATAAGATCCCAGCTGCACAGCTTTGACTTCTATTATTCTAGAATTGCTACACTGTGTGCCAAAGGGGAGCTGCAGAAAGCTAATCAACTAGCAAAAGGAATGCTTTCTGACCTTACCAAATCTATGAACTGA 3270 0.4284 MLFLRTTRPFSSSCSSSSCSSNSSFFSQNNHSLQTLLKRGFTPTLKSVNRFLLSLLRHRKFNLIVHLTNTTLIPSNHTTLSILTWALLKSQKFQEVSSHLIKTTHFTTNSHLMWDTLIQRHHDPNTALSLLQHCIQSGAVLPSPFTFSSLIRKLCSSGDMGMALEVLELMADDRVRYPFDDFVCTSVISGFCRIGKPELALGFYDNALCSGGVLMRPNLLTFTALVGALCRLGRVDEVCGLVRKLENDGLGLDVVFYSTWVCGYVEGKDLVEVFRKMGEMVEKGIDHDDVSYTILIEGFSKLGDVEKSFGILAKMIKEGKRPNKVTYTAIMCAYCKKGKVEEAFAVFEKMGELGIELDEFVFAVLIDGFGRIGDFDSMFRLFDEMERRGISPGVVTYNTIINGLCKFGRTSEADEWSKDVVADVITYSTLLQGYTEEENVPGILQMKRRLEEAGVAMDVVMCNVLIKALFMMGAFEDVYALYKGMPEMDLVPNSVTYCTMIDGYCKVGRIDEALEVFDDFRKTSISSPACYTTLINALCKEGMVAMATEALLELNRKGMEFDRFTYRMLMRTIFIDKGAKGVLDLVDRMEGLGADIYNAVCNDAVFLLCKRGLLEDAYQLCMMMRKKGSSVTSKSYYSILRRYLSNGNREQILPLLISFLKEYGLVNPMVQKILARFLCLNDVHSAIRFLRKIMGNSSAVTLPVSILKILVKEGRALDAYKLVMETQDFLPVMYIDYAIVIDGLCKGGYLNKALDLCSFAEKKGITLDIVVYNSTINGLCHEGCLIEAFRLFDSLQKLNLMPSEITYATLIYALCREGYLPDAEHVFGKMVLKGFQPKTQVYNSLLEGFSKFGQLEKAFELLTEMETKHIEPDSLTVSAVINCHCQKGDMEGALQFYYKFRGKDISPDFLGFLYLIRGLCTKGRMEEARSVLREMLQYKNVAEIINIVNNEVDTESVGDFLGILCEQGSIQEAVTVLNEIARTLFPLLRLSTYNQGSHKQQSIYGRKDSGSESSSNLPSSCESGLAPGSCDTRDVRNLAINNDSNEIRSQLHSFDFYYSRIATLCAKGELQKANQLAKGMLSDLTKSMN* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1439 1089 SUPERFAMILY TPR-like 494 939 IPR011990 GO:0005515
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 768 802 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 908 942 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Dod03g1439 1089 MobiDBLite consensus disorder prediction 999 1026 - -
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 58 275 IPR011990 GO:0005515
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 372 487 IPR011990 GO:0005515
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat family 837 886 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat family 359 406 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat family 768 816 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 873 907 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Dod03g1439 1089 PANTHER FERTILITY RESTORER-LIKE 705 765 - -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 145 173 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 770 803 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 841 874 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 395 416 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 737 768 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 460 493 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 325 359 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 915 938 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 876 908 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 495 525 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 361 393 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 530 562 IPR002885 -
Dod03g1439 1089 TIGRFAM PPR: pentatricopeptide repeat domain 805 837 IPR002885 -
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 681 866 IPR011990 GO:0005515
Dod03g1439 1089 PANTHER ATPASE EXPRESSION PROTEIN 3 705 765 - -
Dod03g1439 1089 PANTHER ATPASE EXPRESSION PROTEIN 3 608 663 - -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 803 837 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 221 250 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 737 765 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 608 628 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 145 173 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 530 558 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 183 205 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 460 488 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 915 937 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 255 285 IPR002885 -
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 867 942 IPR011990 GO:0005515
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Dod03g1439 1089 PANTHER ATPASE EXPRESSION PROTEIN 3 761 1086 - -
Dod03g1439 1089 PANTHER ATPASE EXPRESSION PROTEIN 3 73 575 - -
Dod03g1439 1089 MobiDBLite consensus disorder prediction 999 1028 - -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 838 872 IPR002885 -
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Dod03g1439 1089 PANTHER FERTILITY RESTORER-LIKE 73 575 - -
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 276 371 IPR011990 GO:0005515
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 578 679 IPR011990 GO:0005515
Dod03g1439 1089 Gene3D Tetratricopeptide repeat domain 488 577 IPR011990 GO:0005515
Dod03g1439 1089 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Dod03g1439 1089 PANTHER FERTILITY RESTORER-LIKE 761 1086 - -
Dod03g1439 1089 PANTHER FERTILITY RESTORER-LIKE 608 663 - -
Dod03g1439 1089 Pfam PPR repeat 319 350 IPR002885 -
Dod03g1439 1089 Pfam PPR repeat 489 519 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1439 737 979 Glycosyltransferase AT1G05670 32.463 4.02e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1439 - K17964 gmx:100783405 1525.38