Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1422 ATGCTGGGAAAGGAGAGCACCCGCACCACATTTGGGTTTTTGTTATTGGGAGGAGGCAGATTGCAAAGCAGGTGTGGCGGGCTCATACAGAGGAAGCTGGAGAAGAAGCTGGCCAACACGCGGCAGTGGCCTCCTCGAGGTGCATTGAAGCGTGAACTGAAAAACAAGCAGAGAGAAGAAGAAAGGAAGCGCAAGGAGGAGGAGAGGGCAAAAAAGGCAGCTGAAAATATGCAACGAGCTGGTGATAACAGAGCTGAAGATGATGATATGGACCCAACGCAATACCTTGAGAATAGGCTGAACTATCTTTCAGCTCTGAAAGCTGAAGGGAACAATCCATATCCGCACAAGTTCAAGGTATCTCACTCTGTTGAAGAGTACATCAAGAAATATGAAGGGTTGAGCGATGGGGAGCACGTTGACGATGAATCAGTTTCGTTGGCTGGCCGACTCATGCTCAAGCGCGCTTCAGGTTCAAGGCTTGTCTTTTATGACCTGCATGGTGGCGGCTTCAAGGTCCAGGTTATGGCTGATGCAAGTAAATCGGACTTGGATGAGGCTGAGTTTTCGAAATTCCATTCTAATGTGAAGCGTGGTGATATTGTTGGCGTCACTGGGTTTCCAGGAAAAAGTAAGAAAGGAGAGCTTAGTATTTTTCCCAGGACTATAGTCGTGTTGTCTCATTGTTTGCATATGATGCCAAAGCAAAGGTCTACGAAGCAAAAGTCTGCGGCTGCTGCTGATAATGCAGATTTGAAGATAAATTCATGGGCACCAGGAAGTACCAGGAATCCTGAAACATACATTTTGAAGGATCAGGAAACAAGATATCGGTTGCGGCATTTGGATTTGATGCTTAATAGAGAGGTTCGAGAAATATTCAAGACTAGATCTAGAATAATTGCTTACATCAGGAGGTTCCTTAATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGTGCAGCAGCCCGTCCATTTGTAACTCATCACAATGAACTTAACATGAGGTTATTCATGCGAATTGCTCCAGAACTCTATCTTAAAGAACTGGTTGTTGGTGGGCTGGATCGCGTTTATGAAATCGGTAAACAGTTTAGAAATGAGGGTATAGATTTGACCCATAATCCTGAGTTCACTACCTGTGAGTTTTATATGGCTTATGCCGATTACAATGACTTAATGGAGATAACAGAGAAAATGTTGAGTGGTATGGTTAAGGAACTTACAAAAGGCAGCTACAAAATCAAGTATCACGCAGATGGAGTTGATAAGGATCCTATTGAAATTGACTTCACTCCACCTTTCAGGAGGATTGACATGATTGAGGAGTTAGAGAGGATGGCTGGCCTTACTATTCCCGATGACTTGTCGAGTGAGAAAGCTAATCAATATCTTAAGGATGCATGCTTGAAGTATGAGATCAAATGCCCACCTCCTGAAACAACTGCTCGTTTGTTGGATAAACTTGTGGGACACTTTTTGGAAGAAACATGTGTCAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTGGCAAAGTGGCACAGAGCAAGACCAGGCCTGACTGAACGTTTTGAATTGTTTGTTAACAAACATGAACTTTGCAATGCATATACCGAATTGAACGACCCTGTAGTACAAAGACAGAGATTTGCTGAACAACTTAAGGATCGACAATCAGGTGATGATGAAGCTATGGCCTTAGATGAAACATTTTGTACAGCTCTGGAGTACGGTTTGCCACCAACTGGGGGCTGGGGTTTGGGTATTGACCGGTTGGCCATGTTGCTGACTGATTCACAAAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA 1881 0.4359 MLGKESTRTTFGFLLLGGGRLQSRCGGLIQRKLEKKLANTRQWPPRGALKRELKNKQREEERKRKEEERAKKAAENMQRAGDNRAEDDDMDPTQYLENRLNYLSALKAEGNNPYPHKFKVSHSVEEYIKKYEGLSDGEHVDDESVSLAGRLMLKRASGSRLVFYDLHGGGFKVQVMADASKSDLDEAEFSKFHSNVKRGDIVGVTGFPGKSKKGELSIFPRTIVVLSHCLHMMPKQRSTKQKSAAAADNADLKINSWAPGSTRNPETYILKDQETRYRLRHLDLMLNREVREIFKTRSRIIAYIRRFLNDLDFLEVETPMMNMIAGGAAARPFVTHHNELNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMEITEKMLSGMVKELTKGSYKIKYHADGVDKDPIEIDFTPPFRRIDMIEELERMAGLTIPDDLSSEKANQYLKDACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRARPGLTERFELFVNKHELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQD* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1422 626 Gene3D Bira Bifunctional Protein; Domain 2 268 626 IPR045864 -
Dod03g1422 626 Gene3D - 93 236 IPR012340 -
Dod03g1422 626 PIRSF LysRS2 29 626 IPR034762 GO:0004824|GO:0005524|GO:0006430
Dod03g1422 626 MobiDBLite consensus disorder prediction 39 91 - -
Dod03g1422 626 Pfam OB-fold nucleic acid binding domain 145 225 IPR004365 GO:0003676
Dod03g1422 626 Pfam tRNA synthetases class II (D, K and N) 272 622 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Dod03g1422 626 CDD LysRS_core 287 624 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Dod03g1422 626 PRINTS Lysyl-tRNA synthetase signature 325 341 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Dod03g1422 626 PRINTS Lysyl-tRNA synthetase signature 309 319 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Dod03g1422 626 PRINTS Lysyl-tRNA synthetase signature 354 367 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Dod03g1422 626 PRINTS Lysyl-tRNA synthetase signature 507 523 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Dod03g1422 626 PRINTS Lysyl-tRNA synthetase signature 372 389 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Dod03g1422 626 TIGRFAM lysS_bact: lysine--tRNA ligase 263 625 IPR002313 GO:0004824|GO:0005524|GO:0006430
Dod03g1422 626 Coils Coil 46 83 - -
Dod03g1422 626 CDD LysRS_N 144 284 IPR044136 GO:0000166
Dod03g1422 626 SUPERFAMILY Class II aaRS and biotin synthetases 272 623 IPR045864 -
Dod03g1422 626 SUPERFAMILY Nucleic acid-binding proteins 90 234 IPR012340 -
Dod03g1422 626 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 294 624 IPR006195 -
Dod03g1422 626 PANTHER LYSYL-TRNA SYNTHETASE 39 626 - -
Dod03g1422 626 PANTHER LYSINE--TRNA LIGASE 39 626 - -
Dod03g1422 626 MobiDBLite consensus disorder prediction 47 91 - -
Dod03g1422 626 Hamap Lysine--tRNA ligase [lysS]. 98 625 IPR002313 GO:0004824|GO:0005524|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1422 Dod-Chr3 18492624 18502230 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1422 K04567 - gmx:100785660 1014.6