Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1399 ATGCAGATGGCGGCCTCTTTGGCTTGTCTTGTTGGGAGTGGTTTATCCACACACACTGGTAAAATAACTCTAGGCAGGGACTTCAATGGAAGGCATCTCTTCTCATCTCGTAGACTTTCATCTCTTAATAAGGAACCAAAAGCAGTATCTGTTAGTGCATCCTTGGATCAAAGGAAGCATGAAGGGAGGAGAGAATTTCTGAAATTGTTGAATGCCGGAGTTGGATTACCTGCATTATTGGGAAGTGGGAAAGCTTTTGCTGATGAACAAGGGGTTTCCTCCTCTAGAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAAGATAGAGTTAAAAAAGTGGATTTGTTTGAGAATGGAACCATAGCTGTTGTAGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGGGTACGAGTTCAACTTCCAGGACTTAGCCAAGAGCTCCTACAGAAATTCCGGGAAAAGAATATTGACTTTGCAGCTCATAATGCCCAAGAGGAGTCAGGTTCTCTGTTATTCAACCTGATTGGGAATTTGGCTTTCCCTCTAATCTTGATTGGAGGATTGTTCCTTCTTTCAAGGCGATCATCTGGAGGGATGGGGGGCCCTGGTGGGCCTGGATTTCCCCTTGCTTTTGGTCAATCTAAAGCTAAGTTCCAAATGGAACCAAACACTGGAGTGACATTTGATGATGTTGCTGGGGTGGATGAAGCCAAACAGGATTTTATGGAGGTGGTTGAGTTTCTGAAGAAGCCTGAGAGGTTCACAGCTGTTGGGGCTCGCATACCAAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGAAAGACGCTATTAGCCAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAATTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGGGTCCGTGATTTATTTAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTTTTCGTTGATGAAATTGATGCTGTCGGAAGGCAAAGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAGCAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAATACAGGTATCATTGTCATCGCAGCAACTAACAGGGCTGATATTCTTGACTCTGCTTTATTGAGACCCGGTCGGTTTGATAGACAGGTAACGGTTGACGTTCCAGATATTCGGGGAAGGACTGAAATCCTCAAGGTTCATGGTAGCAATAAGAAGTTTGAAGCTGATGTGTCCCTTGAGGTGATTGCAATGAGAACACCTGGTTTTAGTGGAGCAGATCTTGCAAATCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGATGGCAATTTCATCCAAAGAGATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGCCATGCCATTTGTGGAACATTGACTCCTGGTCATGATGCTGTTCAAAAGGTAACCCTAGTTCCTCGCGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGACGACCCAACTCTGATATCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGTAGGGCTGCAGAGGAGGTTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATTACCAGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGATGGCTCAGCTCAAAGTGCAGATATCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATCGATGCTGCTGTCAAGAGAATCTCAGACGAAGCATATGAAATTGCATTGGGCCAGATACGGAACAACCGAGAGGCAATTGATAAGATTGTGGAAGTCCTACTGGAGAAGGAGACAATGACTGGAGATGAATTCCGTGCTCTCCTGTCCGAGTTTGTTGAAATTCCAGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTAGCTGTTTGA 2085 0.448 MQMAASLACLVGSGLSTHTGKITLGRDFNGRHLFSSRRLSSLNKEPKAVSVSASLDQRKHEGRREFLKLLNAGVGLPALLGSGKAFADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAVVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEESGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKMAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDGSAQSADIIMRMMARNSMSEKLAEDIDAAVKRISDEAYEIALGQIRNNREAIDKIVEVLLEKETMTGDEFRALLSEFVEIPAENRVPPSTPSPVAV* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1399 694 Pfam AAA+ lid domain 423 466 IPR041569 -
Dod03g1399 694 Gene3D - 402 480 - -
Dod03g1399 694 ProSitePatterns AAA-protein family signature. 371 389 IPR003960 GO:0005524|GO:0016887
Dod03g1399 694 Gene3D - 91 171 - -
Dod03g1399 694 Pfam ATPase family associated with various cellular activities (AAA) 268 399 IPR003959 GO:0005524|GO:0016887
Dod03g1399 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 471 IPR027417 -
Dod03g1399 694 PANTHER METALLOPROTEASE M41 FTSH 4 684 - -
Dod03g1399 694 SMART AAA_5 264 403 IPR003593 -
Dod03g1399 694 Pfam Peptidase family M41 482 670 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod03g1399 694 Gene3D - 219 401 IPR027417 -
Dod03g1399 694 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 683 IPR005936 GO:0004176|GO:0004222|GO:0016020
Dod03g1399 694 CDD AAA 243 400 - -
Dod03g1399 694 Gene3D Peptidase M41 481 677 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod03g1399 694 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 684 - -
Dod03g1399 694 SUPERFAMILY FtsH protease domain-like 483 679 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Dod03g1399 694 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 177 672 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1399 Dod-Chr3 18063360 18067830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1399 222 672 Miscellaneous Gene Families AT5G53170 50.441 6.02e-137 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1399 K03798 - gmx:100795567 1164.83