Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1380 ATGGCCACACAACTAGAATGCTTTTCCCCAACCTGCTCCCCAGAATTTGAGTACCTCATCAAGCCTCTCAAAATGGCACCAACAATGTCAAGAACAACTCTAGTGTGGTCCTTGTTTCTTGGGGTGGCTTGTTTCTTTGTAATTGGTGCTTATGGGGAGAACTTGCCTCCTAGGACCATTTCTGGTGGCAATTATCATGAAGCAATAAGCAAATTACAAGCATTTAAGGCCTCTCTAACAAGACATGACTCCATTGCTTCAACACCATCTTCCTATTCACCCTCTTCTAGTCCTTCCCCTTTGCCATCTCAGGGTGTGAACAATCCACGTGTGTACCTTGTGACATCTTATGGTGCAGATCCAACTGGCAATTCAGATAGCACTGAAGCACTTCTTGCAGCTATCGCAGATGCAGCCAAGGGTCCAAGTGAAGGGGAATTGATGCAGGGCATCAGGGACCTTGGAGGTGCACAGGTTAATCTTGAGGGTGGAAGCTACATGATCAGCAAGTCGCTACAGTTGCCGGTTGCCGGAGTCGGGAACCTTATGATACACGGTGGAACCATAAGAGCCTCTAATAATTTTCCAGCAGATGGCTACATCATGGATTTGTCAACCTCTTCTAATCAGAATAGTGGAGAGAGTTCCCCTTCATCATCCTACAATTTTGAGTACATAAGTTTCAAGGACCTCTTGTTGGACTCAAACTATAGGGGAGGAGGAATTTCGGTCATAAACTCACTTAGAACTAATATAGACAACTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAAAGTGGCCATGAAACCTACATCAGGAACTCCTTCCTTGGCCAGCACATCACCGCCGGCGGGGATAAGGACGAAAGGAACTTCTCCGGCACTGGAATAAGCCTCCTTGGCAACGATAATGCCGTCACAGATGTTGTAATTTTCTCTGCTGCCACAGGAATCATGGTTACTGGTCAGGCCAACAGTTTTTCTGGTGTACATTGTTACAATAAGGCCACTGGCTTTGGAGGTACTGGGATTTATTTGAAGCTACCAGGTTTGACACAGACCAGGATTGTTAATTCTTACATGGATTATACCAGCATTGTCGCCGAGGACCCGGTTCAACTCCATATCTCCAGCAGTTTCTTCCTTGGTGATGCCAACATTGTACTAAAATCCATGGAGGGGGTTGTAAATGGCATTAGTATTGTTGATAACATGTTCTCTGGGTCAAATTCTGGGGTTGAAATTGTTCATCTGGACCAATCAAATAGTCCTTTCAAACAAATTGATCAAGCTATTGTTGACAGGAACATTGTGAGGGGGATGAACTTAAAGGCCACAGTAGCAAAAATGTCTATGCAAGGGAATGGAACATCATGGACTGTTGATTTTAGCAACATTCTGCTTTTTCCTAACCTTATTAACAATGTTCAGTACTCATTAAGCTCCACAGGAAGCACCTTCCCAAATCATGCTTTGAGAAATGTATCTGAGAATAAGGTTGTGATTGAAACAAGTGAAGCAGTGAATGCAAATGTTTTTGTCACTGTGGATCAAAGCATGGCAAATTGA 1578 0.4373 MATQLECFSPTCSPEFEYLIKPLKMAPTMSRTTLVWSLFLGVACFFVIGAYGENLPPRTISGGNYHEAISKLQAFKASLTRHDSIASTPSSYSPSSSPSPLPSQGVNNPRVYLVTSYGADPTGNSDSTEALLAAIADAAKGPSEGELMQGIRDLGGAQVNLEGGSYMISKSLQLPVAGVGNLMIHGGTIRASNNFPADGYIMDLSTSSNQNSGESSPSSSYNFEYISFKDLLLDSNYRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKDERNFSGTGISLLGNDNAVTDVVIFSAATGIMVTGQANSFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMEGVVNGISIVDNMFSGSNSGVEIVHLDQSNSPFKQIDQAIVDRNIVRGMNLKATVAKMSMQGNGTSWTVDFSNILLFPNLINNVQYSLSSTGSTFPNHALRNVSENKVVIETSEAVNANVFVTVDQSMAN* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1380 525 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 29 524 - -
Dod03g1380 525 Pfam Pectate lyase superfamily protein 114 341 IPR024535 -
Dod03g1380 525 SMART pbh1 247 269 IPR006626 -
Dod03g1380 525 SMART pbh1 304 325 IPR006626 -
Dod03g1380 525 SMART pbh1 179 246 IPR006626 -
Dod03g1380 525 SMART pbh1 399 420 IPR006626 -
Dod03g1380 525 PANTHER POLYGALACTURONASE QRT3 29 524 IPR039279 GO:0004650
Dod03g1380 525 Gene3D - 114 525 IPR012334 -
Dod03g1380 525 SUPERFAMILY Pectin lyase-like 110 501 IPR011050 -
Dod03g1380 525 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1380 Dod-Chr3 17805541 17808360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1380 - - gmx:100804107 794.653