Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1320 ATGATGATAGACATCAAATATATATGGGTGCTTGTTTCAATCAACAGGTACATTCTTGGCACCTTAGAAAATGAAAGAACAAGGAATAGGCTAAAACTGAGATGCACCTCCAAGTTAAGGATCCAAAAGCAAGAGTTCTATGAATTCTCTGAGCAGTCAGTGCTGTCAAATCTTTATTGGGGTATCGACAGCATTGAAACTGCAATTCAAGCACAGCAGCAAGAGGAAAGGTCCTTTAGGCTAATGAACTCGGAACAAATGCTTCAGGTGCCTGCAATGCTTGATGAAGATGAGGTTACAGCAACAATTCCAAACAGTTATTTGGTTTGCTGCTCCTACTTTTACCTCTCAGTGGTTAGGAGACTTCAGGGAGATGAGTGGCAGGCAGCACTGCATTTTCTCCAGGCAGTGTTGGTCTCACCAAAGCTTGTGTGCACAGAATTTGCATCAGAGCTTTGTGAGAGCCTTTTCCACCAAGAAAACATCCCCAGAAGGCATAAAAACAGTGGCAGCAAGAGTTTGGAAACTGTTTCTAATGTAACTTATGAGGATCAAATGTATGAAGCAATTAGGGAGATGGCAAGGAGATACAAGGAAGGTTTGGTGTATTACCAGGTCATGCTTTATGGAGAGACTCCATGGTGGCGGAGCTATTGCAGCAAACAATCATCACATTATATGGATGTACCAAATACCAGCTGTGCATCTTCAACTTCAGTTGAACACGATCCAAAATCGAAAACCAGCAATCTATATCAATGCCACGGCTTGGAACATGCTCCAAAATATCCCATGCAAGACGAACATTTGGATGAAAGAAGCATGATTAAGTTTGATCCTAGCAGATTCAACAGGACCATTGAAGATGCTACTTTATCCATCCCAAATTTCCATGTACAGGATGAATTAATTGAGGAAGCATTACAGCCGCTAAAGTTCCATCTCTTTGATCATGTAACATTTAAATCTGCTTGCAAACATTGGCTCAGCCATAAGAATGATGAAGAAAGTTCTGAATTGGAATTGCAAAGGCCACATAGCCAAGGAAACTTCAATGAAGTTACTTCAAACTCGAGAAGGTATTCCTTGCATGAGCTTACAGGACTGATTGAAAGAAGAATTTCAGAACTACATTATTCAAAGGCATTAGGAAAATGTGGAGAAGAATATACTTTTGACATTGCATCCATCTATGAGAGTCTGACTGATTCATCTTCAGGCACTACTTATGCTTCTTTAAGGGAAGCAATATTGGATGAACTACTAATAGCTATCTCTACTTCCAAAGAGGAAAGAGAAATAAGGGCATCTGTATCTATTCTGACTACAATAATTTCAAGGAACAAGTCAGTTATAGAAGACGTCAAGAAGAAAGGTCTAAAGTTGTGTGATCTGGCAAGTGCTCTAAAACAAAATGTCCATGAGGCAGCAATTCTCATCTATTTAATTAATCCATCTCCTATAGATATAAAAACACTGGAACTTCTACCAATATTGGTGGAGATTGTATGCACTTCAAATAGTCGCAAGAGTAAGGCACAGTCACTTCTTCTGACACCTCATGCAGCATCATTGATGATCATTGAAGAACTAGTAACTTCATTCGACCATGTGACAAATAACATGCATTTGGCTGCAATCAGTTCCCCCCATGTCCTCAGTGGACTCCTAGAAGTTGCCAGAAATGATAATCTCGAAGAGTTTTTCTCCTTGACCACCATTCTTATAAAGTGCATGTTCGATGCACAGTGTAGAAAGTATGTGTCACAATTCACTCCTCTTTCTCCCTTTATCCACCTTCTGCAGACAGAAAACACCCGTGCCAAATGCATGGCACTCGAATTCTTTCATGAAATCCTTTGTATTCCACGATCATCAGCTATAAGTCTGCTGCAGCGCATACAGCAAGAAGCAAGCATTGATATTATGCGGATACTAATGCTTTGTGCCCATCAATTAGAACCTGATCACCAGCTTTTTGCAGCAAACATACTGCTTCAGTTAGACACACTGAATTCATCTGATAAAAGCTTGTTCAGTGAAGAAGCAGTGAAGATCCTTCTCAGGGCATTGGCATCTCAAGAAACCTCAGAGCAGATATTATGTGCATCCATTCTATCAAATCTTGCTGGAACATATTCTTGGACAGGGGAGCCATATACAGCTGCATGGCTGCTGAGAAAGACAGGATTGACCTCTCCCTACCACCAGAATATGATAAGGAACTTCAACTGGCTGGATCAGACCCTACAGGATACTAGCACAGATTTATGGTGCAGTAAAATTTCCAAATGCATCATAAGTGTTGGTGATTCCATCTTCCATGCTTTAGAGAATGGGTTAAGAAGCAAGATGAAAATGGTTTCTAGAGACTGCCTTGTAGCAATTTCATGGCTTGGGTGTCAAATATCAAAAAGCCCAGATAGCATCAGATATTCTGCATCTGAGATCATACTAGGTGGAATTGAGAAATTTCTTCATCCTGGGATGGAGCTAGAAGAAAGACTTCTTGCATGTCTGTGCATTTATAACTATGCCACTGGTAAAGGTAATCAAAAAATAATTCATTTCTCAGAAGGATTAAAGGAATCACTGAGACGCCTTTCAAATGTAACTTGGATGGCTGAGGAATTACACAAAGTAGCTGATTTCTTGCTGCCAAACATATCACGTATTTCTTGTGTTCACACACAAATCCTTGAGGCAAGACACAACTCTAGCATAGCAGTTTGCTGCCTCATATACTACAAGGGACTTCTATTCAGTGGATATTCAGATGGAACGATCAAGGTCTGGGATATTAGGGGGCACTCAGCAAGCCTTGTATGGGACATTAAGGAGCACAAGAAGTCTGTGACGTGCTTTTCACTATCTGAGCTATCAGACAGCCTTTTGAGTGGATCTACTGACGGAACCATAAGGGTGTGGAAAATGATCCAGAGAAAGCTGGAATGTGTTGAAGTAATAGCCTTGAAGGAACCAATTCATCAATTACATGCATATGGTGAAACAATTTTTGCAATTACTCAAAGCCAAGGAATAAAGCTAGTTAACAAATCAAGAGTAATCAGAAATATTTTCAAAGGTAAATATGTAAAGTGCATGACAGGGATTCAGGGAAAGTTATACATTGGCTGCTCAGATTCAAGCATACAGGAGTATTCCCCAACATACAACAGGGAACTAGAAATCAAGCCACCTACAAGGAGTTGGAGGAAGCAAAGTAAGCCCATCCATTCAGTTGTAGCATATAGAGAGTGGCTCTATAGTGCAAGTAGGCACGTTGAAGGCACAACATTGAAGGAATGGAAAAGAACTGGGAAACCCAAGATTTCACTCCCTTATGGCAAAGGAGATAACTTTGTGGCCATGGAAGTGTTAGAAGACTTCATATACCTAATCTCCAGCTCATCAGCAAACAGCATTCAGATCTGGTTGAGAGGGACACCAAAAAAATTGGGGAGAATATCAGCAGGAAGCAAGATAACAAGCCTCCTTGCTGCAAATGACATCATTCTTTGTGGCACTGAGATGGGACTAATCAAGGTACATGCAGCTCAT 3561 0.4055 MMIDIKYIWVLVSINRYILGTLENERTRNRLKLRCTSKLRIQKQEFYEFSEQSVLSNLYWGIDSIETAIQAQQQEERSFRLMNSEQMLQVPAMLDEDEVTATIPNSYLVCCSYFYLSVVRRLQGDEWQAALHFLQAVLVSPKLVCTEFASELCESLFHQENIPRRHKNSGSKSLETVSNVTYEDQMYEAIREMARRYKEGLVYYQVMLYGETPWWRSYCSKQSSHYMDVPNTSCASSTSVEHDPKSKTSNLYQCHGLEHAPKYPMQDEHLDERSMIKFDPSRFNRTIEDATLSIPNFHVQDELIEEALQPLKFHLFDHVTFKSACKHWLSHKNDEESSELELQRPHSQGNFNEVTSNSRRYSLHELTGLIERRISELHYSKALGKCGEEYTFDIASIYESLTDSSSGTTYASLREAILDELLIAISTSKEEREIRASVSILTTIISRNKSVIEDVKKKGLKLCDLASALKQNVHEAAILIYLINPSPIDIKTLELLPILVEIVCTSNSRKSKAQSLLLTPHAASLMIIEELVTSFDHVTNNMHLAAISSPHVLSGLLEVARNDNLEEFFSLTTILIKCMFDAQCRKYVSQFTPLSPFIHLLQTENTRAKCMALEFFHEILCIPRSSAISLLQRIQQEASIDIMRILMLCAHQLEPDHQLFAANILLQLDTLNSSDKSLFSEEAVKILLRALASQETSEQILCASILSNLAGTYSWTGEPYTAAWLLRKTGLTSPYHQNMIRNFNWLDQTLQDTSTDLWCSKISKCIISVGDSIFHALENGLRSKMKMVSRDCLVAISWLGCQISKSPDSIRYSASEIILGGIEKFLHPGMELEERLLACLCIYNYATGKGNQKIIHFSEGLKESLRRLSNVTWMAEELHKVADFLLPNISRISCVHTQILEARHNSSIAVCCLIYYKGLLFSGYSDGTIKVWDIRGHSASLVWDIKEHKKSVTCFSLSELSDSLLSGSTDGTIRVWKMIQRKLECVEVIALKEPIHQLHAYGETIFAITQSQGIKLVNKSRVIRNIFKGKYVKCMTGIQGKLYIGCSDSSIQEYSPTYNRELEIKPPTRSWRKQSKPIHSVVAYREWLYSASRHVEGTTLKEWKRTGKPKISLPYGKGDNFVAMEVLEDFIYLISSSSANSIQIWLRGTPKKLGRISAGSKITSLLAANDIILCGTEMGLIKVHAAH 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1320 1187 ProSitePatterns Trp-Asp (WD) repeats signature. 920 934 IPR019775 -
Dod03g1320 1187 Pfam WD domain, G-beta repeat 943 977 IPR001680 GO:0005515
Dod03g1320 1187 Pfam WD domain, G-beta repeat 903 933 IPR001680 GO:0005515
Dod03g1320 1187 SMART WD40_4 1106 1146 IPR001680 GO:0005515
Dod03g1320 1187 SMART WD40_4 893 933 IPR001680 GO:0005515
Dod03g1320 1187 SMART WD40_4 938 977 IPR001680 GO:0005515
Dod03g1320 1187 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 9 261 - -
Dod03g1320 1187 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 273 1183 - -
Dod03g1320 1187 ProSiteProfiles Trp-Asp (WD) repeats profile. 945 978 IPR001680 GO:0005515
Dod03g1320 1187 PANTHER OS04G0584500 PROTEIN 9 261 - -
Dod03g1320 1187 PANTHER OS04G0584500 PROTEIN 273 1183 - -
Dod03g1320 1187 Gene3D - 1039 1186 IPR015943 GO:0005515
Dod03g1320 1187 Gene3D - 395 889 IPR011989 -
Dod03g1320 1187 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 942 IPR001680 GO:0005515
Dod03g1320 1187 SUPERFAMILY ARM repeat 593 892 IPR016024 -
Dod03g1320 1187 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 945 978 - -
Dod03g1320 1187 SUPERFAMILY WD40 repeat-like 906 1180 IPR036322 GO:0005515
Dod03g1320 1187 Gene3D - 890 1036 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1320 Dod-Chr3 16790000 16797426 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1320 - - mtr:MTR_2g436530 1664.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1320 03 16790000 16797426 Dod03g1320 03 16790000 16797426 ECH