Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1317 ATGAAGGAGATGACCAAGATACAGAGGTCAACACGTGCATTTTACAAGTTTCCTTCTTTTTCTCAATCATGGCACTCGAACCCTTTTCGTTCCTTGCATTCTCCCTCGTCTCCTTCATTCACAGACCACAGGGTACTCCACAGGGTTCTTGAACACTGCAGAGTTTCCAGGGATTCCAAAACCGCAGCTGAAACCCATGCAAGGGTTGTTGTACTTGGGTATGCTACATACCCATCTCTTGTATCTTCTCTGATTTCAACCTATGCTCATTGTCACCAACCCCACATTACCAACCACGTTGTTGCTCACCTTTTCTCCCATGTTTTGGACCTATTCAACATGAACTTGATAATTGAAAGCTTGATGAAATCTGGGCAGTGTCATGTTGCCAAGAAGGTGTTTGTCAAAATGCCTGTTCGAGATGTTGTCTCTTGGAACACCATGATTGGAGGCTACGTGAAGAACTCACGATTTGTTGACGCATTGAGCCTTTTCAAGGGGATGCTGAGTGCTAAAGTTGAGCCTGATGGGTTCACTTTTGCTTCTGTAGTTACCGGGTGCGCGCGCCTCGGTGCTCTTGGCAATGCCAAGTGGGTTCACGCTTTGATGGTTGAGAAGAGGATTGAGTTGAATTATATATTGAGCGCTGCGTTGATTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCGAAGCGGGTTTTTGACAATGCTGCGCGGGATCACGTGTCAGTTTGGAATGCTATGATTAATGGGTTGGCGATTCACGGGCTTGCTTTGGATGCAACTGCAGTGTTTTCAAGGATGGAGTTGGAAAAGATGTTACCTGATTGTGTTACTTTTATTGGGGTTCTAACAGCTTGTAGCCATTGTGGATTTGTTGAAGAAGGTCGTAAGTATTTTGATATGATGCAGAGTCGATTCTTGATTAAGCCGCAACTTGAGCATTATGGAACCATGGTTGATCTTTTGGGAAGGTCGGGGCTCTTGGAGGAGGCCTATGACATGATTAAGGCGATGCCGATGGAGCCTGATATTGTTATCTGGAGAGCACTTTTGAGTGCTTGTAGAACCTATAGAAACAAAGAACTTGGTGAAGTTGCGATTGCAAATATATCGCGTCTTGAGAGTGGAGATTTTGTTTTGCTGTCAAACATGTATTGTTCATTAAAGAACTGGGATAGTGCTGAGAGAGTAAGACGGATGATGAAAACCAGAGGGGTTCGTAAAAAACGGGGTAAGAGTTGGATTGAATTGGGGAACAGCATTTACCAATTCAAGGCAGATGATCACTCACATGCTGAAATGAAAGCAATTCACAGAGTGCTGGAAGGTTTGAACCAAAGAGCTAAGTTGGAAGGCTTCACTCCCTTGACAGATCTGGTTTTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAAATTTTCATAGTGAGAAGTTGGCCTTAACCTTTGGGGTACTTAAAAGTAGCCCTGGAACAAAAATCAGGATTTACAAGAACTTGCGTATCTGTCAAGATTGTCATGATTGGATTAAAGTTGTGTCCAGAATATTAAACAGAGAGATAATCGTGAGGGATCGTATCCGTTTTCACCAATTTGAAGGTGGATTTTGCTCTTGCGGAGACTACTGGTAG 1641 0.4327 MKEMTKIQRSTRAFYKFPSFSQSWHSNPFRSLHSPSSPSFTDHRVLHRVLEHCRVSRDSKTAAETHARVVVLGYATYPSLVSSLISTYAHCHQPHITNHVVAHLFSHVLDLFNMNLIIESLMKSGQCHVAKKVFVKMPVRDVVSWNTMIGGYVKNSRFVDALSLFKGMLSAKVEPDGFTFASVVTGCARLGALGNAKWVHALMVEKRIELNYILSAALIDMYAKCGRIDVSKRVFDNAARDHVSVWNAMINGLAIHGLALDATAVFSRMELEKMLPDCVTFIGVLTACSHCGFVEEGRKYFDMMQSRFLIKPQLEHYGTMVDLLGRSGLLEEAYDMIKAMPMEPDIVIWRALLSACRTYRNKELGEVAIANISRLESGDFVLLSNMYCSLKNWDSAERVRRMMKTRGVRKKRGKSWIELGNSIYQFKADDHSHAEMKAIHRVLEGLNQRAKLEGFTPLTDLVLMDVSEEEKEENLNFHSEKLALTFGVLKSSPGTKIRIYKNLRICQDCHDWIKVVSRILNREIIVRDRIRFHQFEGGFCSCGDYW* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1317 546 PANTHER OS07G0578800 PROTEIN-RELATED 29 492 IPR045215 GO:0003723|GO:0009451
Dod03g1317 546 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 492 - -
Dod03g1317 546 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Dod03g1317 546 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Dod03g1317 546 Gene3D Tetratricopeptide repeat domain 217 439 IPR011990 GO:0005515
Dod03g1317 546 Gene3D Tetratricopeptide repeat domain 89 216 IPR011990 GO:0005515
Dod03g1317 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Dod03g1317 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Dod03g1317 546 Pfam PPR repeat 279 307 IPR002885 -
Dod03g1317 546 Pfam PPR repeat 316 341 IPR002885 -
Dod03g1317 546 Pfam PPR repeat 245 270 IPR002885 -
Dod03g1317 546 Pfam DYW family of nucleic acid deaminases 454 546 IPR032867 GO:0008270
Dod03g1317 546 Pfam E motif 359 418 IPR046848 -
Dod03g1317 546 Pfam PPR repeat family 140 189 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1317 Dod-Chr3 16776138 16778821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1317 82 546 Glycoside Hydrolase AT3G49170 37.131 3.18e-106 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1317 - - lang:109344997 872.848