Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1280 ATGTCATCTCTGAGCAAGGAATTGGTGTTCCTCATCCTTCAATTTCTCGAGGAAGAGAATTTCAAGGAAACTGTCCACAAGTTGGAGCAAGAATCTGGATTCTTCTTCGATGTGAAGCACTTCGAAGAGAAAGTGCTTTCTGGGGAGTACGAAGAGGTTGAGAAGTACCTTTCTGGGTTCACAAAAGTCGATGACAATCGTTACTCCATGAAAATATTCTTTGAAATTAGGAAGCAGAAGTATCTCGAAGCCTTGGACAGGAATGAGAAAACAAGGGCTGTTGAAATACTGGTGAAGGATTTAAGAGTGTTTTCAACATTTAATGAAGATTTATACAAAGAGATTACACATCTTTTAACCCTTGACAACTTTAGGGAGAATGAACAGTTATCAAAGTATGGTGATACTAGATCAGCTAGGAACATAATGCTGGTAGAGCTTAAGAAACTGATTGAAGCAAATCCCCTGTTTCGAGACAAGCTTGTATTTCCTGGATTGAAGGCTTCAAGGTTGCGAACCCTGATTAATCAAAGTTTGAATTGGCAGCATCAGCTGTGCAAGAATCCAAGGCCAAATCCAGACATCAGAACACTATTTGCTGACCACTCATGTTCTCCTCCGAATGGATCTCGTACACCTACTACTCCTCTTTCTGTCTCACTTCCCATGGCAGCTGTCGCAAGGCCTTCATCTTATGCTCCATTAGGAGCGCCTGCTGGATCATTTCCACCAGCCCCAGCTGCTGCTAATGTTAATACTTTAGCTGGATGGATGGTGAATGCAAATCCTTCCCCATCTGTCCAGTCTTCTGTGGTTGCTGCTTCACCATTGCCTGCTCCACCAAATCAAGTCTCCATGTTGAAGCATTCTAGAACACCTAATGCTCTTGGACTGGTGGATTATCAAAATAATGATCATGAGCAGGTAGTGAAACGGTTGCGACCAGCACAAGCTGTTGATGAGGTCACATATCCTGCTCCACCTCAACAAGCCTCTTGGTCAGTTGATGAGCTTCCTAGAACTGTTGTTTGTACATTACATCAGGGATCAACAGTGACAAGCATGGATTTTCATCCTTCTCTTCATTCCTTATTTGCTGTTGGTTGTGGAAATGGCGAAATTTCACTATGGGAAGCAGGTCAAAGAGAGAAGCGGATATCAAAGCCTTTCAAAGTGTGGAATATTGCTGCTTGTTCTGTCTTATTTCAGGCTGGAATTGCAAAAGACTCATCTATAGCTGTCAGCCGTGTATCATGGAGTCCAGATGGGAAGTTTATTGGTGTTGCTTTCACAAAACATTTGATTCATTTATATGCTTTTCAAGCTCCTAGTGATCTACAACAGCATTTGGAGATAGATGCTCATGGCGGTAGTGTAAACGACTTGGCATTTTCTTACCCAAACAAACAGCTATGCATTGTAACTTGTGGAGATGACAAGTTGGTAAAGGTGTGGGATTTGACTGGACGAAAGATATTTAACTTTGACGGTCATGGGGCACCTGTTTATTCTGTTTGTCCTCACTACAAGGAAAGCATCCAGTTTATATTTTCTACTGCTGTTGATGGTAAAATAAAGGCCTGGTTGTATGATAACAATGGCTCCAGGGTGGACTATGATGCTCCTGGGCAGTGGTGCACCACAATGCTCTATAGTGGTGATGGAAGTAGATTGTTCTCTTGTGGAACAGGTAAGGATGGAGATTCTTTCCTAGTTGAGTGGAATGAAAGTGAAGGATCATTAAAGAGAACATATTCTGGGTTTAGAAAGAAATCTTCTGGCATTGTGCAATTTGACACTGCAAAGAGTCACTTTTTGGCTGCTGGTGAAGATAACCAGATAAAGTTTTGGGATATGGATAATATCAATGTTCTGGCTAGTACAGATGCTGATGGTGGTCTTCCTAGTCTCCCTCGGTTGCGGTTCAACAAGGTAGGAAATCTGCTTGCTGTTACTACAGCAGACAATGGTTTGAAAGTCCTTGCTAATGCTGATGGTATCAAGTACTTAAGGACCATTGATGCTTGGTCTCATGAAGCATCTAAAGCACCAGTTGAGATAAAGGCATCTGGCTCTTCTGCGGTAACGAATATCAGTCCAATCATCAATAAAGCAGAACATATGGACAGAAGCTCCCCTGCTGGGATGGCACCTGTTGTTAACGGATTTGATTCTAATCCTAGAAGCATAGAGAAGAAAAGAAGTTTGGATGACTTATCTGAAAAATCTAAAGCTTGGGAATTAACAGAAATAGTTGATCCTATTCAGTGTCAGATAGTTACTCTGCCGGATAATATGGGTCCAACTAACAAGGTTGCTCGTCTTCTCTACACAAATTCTGGGGTTGGCCTTTTGGCTCTTGGTTCTAAAGGGATTCAGAAGCTGTGGAAATGGAGCCGCAATGAACAGAATCCTAGTGGAAAGGCCACGGCAAGTGTTGTTCCACAGCTTTGGCAACCGAACACTGGTCTTGTCATGACTAATGATGTCCCAGACAATTCTGAAGCAGTAATTCCTTGCATTGCACTCTCAAAGAATGACTCCTATGTTATGTCTGCATGTGGAGGGAAAATTTCACTGTTCAACATGATGACATTTAAGGTAATGGCAACTTTCATGCCACCTCCTCCAAGTTCAACCTACCTTGCGTTTCACCCTAGAGACAATAACATCATTGCGATTGGAATGGAAGATTCATCAATTCATATTTACAATGTTAGGGTGGATGAGGTCAAATCTAAATTGAAGGGTCATCAGAAGCCCATTAGTGGTTTAGCTTTTTCACCTCAACTGGGTATCTTGGTTTCATCAGCTGGTGATGCTCAGCTTTTCTGTTGGAGCATTGACTCATGGGAGAAGAAGAAATCACTATCAATCCAAACACCAGCTGGAGATGCATTAGTTGGCGATACTCGGGTGCAATTCCACATTGATCAAGTACACTTGCTGGTATCCCATGAATCGCAGCTAGCGATATATGATGCTTCAAAAATGGAATTGATTAGGCAGTGGATGCCACAAGATGGTGTGTCTGGTTCCATATCATATGCCACATATTCCTGCGACTGCAAACTAATTCATGCCACCTTCACCGATGGAAATATTGGAGTATTTGATGCTGACAGCCTGAAACTGCGATGTCGGATTGCTTCATCTGCCTACCTCCATCAAACTTCATCAGACAGCCAAAATGTGTATCCTGTAGTTGTTGCTGCACACCCGCAGGAGCCAAATCAATTCGCAGTTGGACTGTCAGATGGCTCTATTAAGATTATAGAGCCCATGGAGTCTGAAGGGAATGCAATGCAGAATGGTAGAACAGCATCACCCTCCCTCCCAACAAATAGCTCTGTTCCTGAGCAGCTCCAAAGATGA 3375 0.4264 MSSLSKELVFLILQFLEEENFKETVHKLEQESGFFFDVKHFEEKVLSGEYEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRNEKTRAVEILVKDLRVFSTFNEDLYKEITHLLTLDNFRENEQLSKYGDTRSARNIMLVELKKLIEANPLFRDKLVFPGLKASRLRTLINQSLNWQHQLCKNPRPNPDIRTLFADHSCSPPNGSRTPTTPLSVSLPMAAVARPSSYAPLGAPAGSFPPAPAAANVNTLAGWMVNANPSPSVQSSVVAASPLPAPPNQVSMLKHSRTPNALGLVDYQNNDHEQVVKRLRPAQAVDEVTYPAPPQQASWSVDELPRTVVCTLHQGSTVTSMDFHPSLHSLFAVGCGNGEISLWEAGQREKRISKPFKVWNIAACSVLFQAGIAKDSSIAVSRVSWSPDGKFIGVAFTKHLIHLYAFQAPSDLQQHLEIDAHGGSVNDLAFSYPNKQLCIVTCGDDKLVKVWDLTGRKIFNFDGHGAPVYSVCPHYKESIQFIFSTAVDGKIKAWLYDNNGSRVDYDAPGQWCTTMLYSGDGSRLFSCGTGKDGDSFLVEWNESEGSLKRTYSGFRKKSSGIVQFDTAKSHFLAAGEDNQIKFWDMDNINVLASTDADGGLPSLPRLRFNKVGNLLAVTTADNGLKVLANADGIKYLRTIDAWSHEASKAPVEIKASGSSAVTNISPIINKAEHMDRSSPAGMAPVVNGFDSNPRSIEKKRSLDDLSEKSKAWELTEIVDPIQCQIVTLPDNMGPTNKVARLLYTNSGVGLLALGSKGIQKLWKWSRNEQNPSGKATASVVPQLWQPNTGLVMTNDVPDNSEAVIPCIALSKNDSYVMSACGGKISLFNMMTFKVMATFMPPPPSSTYLAFHPRDNNIIAIGMEDSSIHIYNVRVDEVKSKLKGHQKPISGLAFSPQLGILVSSAGDAQLFCWSIDSWEKKKSLSIQTPAGDALVGDTRVQFHIDQVHLLVSHESQLAIYDASKMELIRQWMPQDGVSGSISYATYSCDCKLIHATFTDGNIGVFDADSLKLRCRIASSAYLHQTSSDSQNVYPVVVAAHPQEPNQFAVGLSDGSIKIIEPMESEGNAMQNGRTASPSLPTNSSVPEQLQR* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1280 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 487 IPR001680 GO:0005515
Dod03g1280 1124 SUPERFAMILY WD40 repeat-like 972 1094 IPR036322 GO:0005515
Dod03g1280 1124 Gene3D - 539 700 IPR015943 GO:0005515
Dod03g1280 1124 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1104 IPR027728 GO:0006355
Dod03g1280 1124 Pfam WD domain, G-beta repeat 447 486 IPR001680 GO:0005515
Dod03g1280 1124 Pfam WD domain, G-beta repeat 914 946 IPR001680 GO:0005515
Dod03g1280 1124 SMART Lish 4 36 IPR006594 GO:0005515
Dod03g1280 1124 SUPERFAMILY Tricorn protease domain 2 328 440 - -
Dod03g1280 1124 MobiDBLite consensus disorder prediction 1098 1124 - -
Dod03g1280 1124 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Dod03g1280 1124 SMART WD40_4 908 947 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 865 905 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 1052 1093 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 445 486 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 395 439 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 997 1039 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 821 862 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 488 529 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 339 378 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 532 575 IPR001680 GO:0005515
Dod03g1280 1124 SMART WD40_4 578 618 IPR001680 GO:0005515
Dod03g1280 1124 ProSitePatterns Trp-Asp (WD) repeats signature. 473 487 IPR019775 -
Dod03g1280 1124 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Dod03g1280 1124 Gene3D - 969 1098 IPR015943 GO:0005515
Dod03g1280 1124 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 915 950 - -
Dod03g1280 1124 Gene3D - 295 538 IPR015943 GO:0005515
Dod03g1280 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 915 956 IPR001680 GO:0005515
Dod03g1280 1124 MobiDBLite consensus disorder prediction 1100 1124 - -
Dod03g1280 1124 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 413 952 IPR011047 -
Dod03g1280 1124 Gene3D - 735 968 IPR015943 GO:0005515
Dod03g1280 1124 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 1104 - -
Dod03g1280 1124 ProSiteProfiles Trp-Asp (WD) repeats profile. 596 627 IPR001680 GO:0005515
Dod03g1280 1124 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1280 Dod-Chr3 16274465 16283724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1280 - - qsu:112005985 1703.72