Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1234 ATGAGGAATATGGCTTTCCAGAAGTATGTTCCTTCTGGTAAGGCACCTATTGTGAAAATTAAACATTTGAGTATTTCCAGTAAGGTGTCTGAGAAAGCTCAGCCTGAGATGACGAATCAGAATCATGACATGGATGTGGATGTTGACCTTAGGGAAGTTTATTTTCTCATGATGCATTTTCTTTCTGCTGGGCCGTGTCAGAAGACTTATGTACAGTTCAGGAATGAACTTCTTGAGCATCAACTTTTACCTAGAAGGTATCATGCTTGGTATTCAAGGAGTGGGGCACGTAGTGGTGATGAAGATGATGATGGTATATCATTCCCTTTATGTTACAATAAGTTGGTGGAGAGGTATCCTCACATTGAAAAGGATCACTTGGTAAAGCTCTTGAAGCAATTGTTATTAAATACAGCCTCCCCATCTCAGGGCATGAGTCATGGAAATGCTCCAAATGCAGCTGATGTACCTACTCTCATGGGAAGCGGTCCATTTTCACTTTTGAGCTGTGACAGTGATAAGATAAATGAAGAAGTCAAACGGCCGCCTCCTCACATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGTCTTAATTTGAGGGAAATTGGGGGTGGTTTTCCAAGACATCATCGTGCACCATCTATACGTGCTGCATGCTATGCCATTGCAAAACCTTCCACCATGGTACAGAAGATGCAAAATATCAAGAGGACAAGAGGACACCGTAATGCTGTCTATTGTGCTATATTTGATCGGTTAGGGAGATATGTCATTACTGGTTCAGATGATCGACTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTGTTCACCTGCCGTGGACATGATGGTGACATCACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCCTCATCATCGAATGACTGTATCATTCGAGTTTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGGGGACATACTGGGGCTGTTACAGCCATAGCATTTAGTCCCAGACCTGGTGCTGCATACCACCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGCACACCCAGTCAAGTCCAAGAATATATGTTCCGAGGCCTTCTGATTCTGTAACTGGGAGGAGCAGTGTTCCATCTTCAAGTACTTTGCCACAGAGCCATCAGATTTTTTGCTGCGCCTTTAATGCTAATGGAACTGTCTTTGTCACTGGTAGCTCTGACAATCTTGCCAGGGTCTGGATTGCTTGTAAACTAGGTGCGGATGACACTGACCACCCAAATCACGAGATAGATGTGCTATCTGGGCATGAAAATGATGTAAATTATGTCCAATTTAGTGGATGTGCAGTAGCATCTCGATTCTCTCTGGCAGAAACTTGGAAGGAAGAAAATCTTCCCAAATTTAAGAATTCCTGGTTGAATCATGACAATATAGTTACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCCAAATCACGCAGGTCACATGGAAGAAGTGGTCGCTGGACAAGGGCATATCATCTGAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCAGAGGGGTGGTCCTCGTCAGAGGATTCTACCCACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTAGACAACCGCTTTGTCCTAGCAGCTATTATGGAATTTGTGTTTGGAATGCTTCTGACTGGCAGCTTAGTACACTCATTGACTGGCCATACAGAATCTACATATGTTCTGGATGTTCATCCGTTTAACCCTCGGATAGCTATGAGTGCTGGATATGATGGAAGAACTATTGTGTGGGATATATGGGAAGGCATGCCTATCCGGATATACGAGATATCTCATTTCAAGTTGGTGGATGGGAAGTTTTCTCCGGATGGGACATCAATTATACTTTCAGATGATGTTGGTCAACTATATATATTAACCACAGGTCAAGGTGAGTCTCAGAAAGATGCAAAATACGATCAGTTCTTTCTTGGAGATTATCGACCTGTCATTCAAGACTCCCATGGTAATGTACTTGACCAGGAAACTCAGATGGTTCCCTATCGACGGAATCTGCAAGATTTGCTTTGCGATTCAGCAATGATACCATACCCAGATCCTTATCAAACTGAATTTCAGCAAAGACGATTGGGAGCTTTAGGCCTTGAATGGCGCCCATCATCACTAAAGCTTGCTGTTGGTCCAGACTTCAGTCTAGACCCAGATTATGTCATGCTTCCACTGGCAGACTTGGATGTACTCACAGAACCTCTGCCAGAGTTGATAGATGCTATGGACTGGGAACCAGAAATCGAAGTGTTTAGTGATGATACAGATTCAGAATATAATGTCACTGAAGATGGCTCTTCTCGGGGTGAGCACGGATGTTCAAGCTCCAATGCCTCTGGTGATTTAGAGTGCAGCACAGACAGCAGTGAAAGACAGGACCCTCATATGGACAGCATTCGCAGATCAAAAAGGAAAAAGCAGAAGGCTGAAACTGAGATTATGACTTCTTCTGGGAGACGAGTGAAAAAGAGGAATTTAGATGAGTGCGATGGCAATGCTTTCAGCAGTAGCCGAAGTAGGAAGGGAAAAGGTAGCCAAAAAGTATCAAGGAAGAAAACTTCTAAATCAAAATCTTCCAGACCTCAAAGAGCTGCTGCACTCAATGCTCTACATTTATTTTCTAAAATAACGGGTACACCAACGGATGGAGAAGATGATAGTATGGTTGGTGATTTTTCAGATAGTGAATCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCTGATAGAGATTTACAGAATGACCAACTGAAATATTCAAAGGGAAAAGAAGTAGTATCAATGTATGAATCAGAGGACATGAAATCTCGTGAGTTAACTGAGACTGATACAAATGCAGTGAACAGGAGGAGATTGGTTCTCAAGTTGCCAGTTCGTGATTCATCTAAACCCATGCATGAATTTGACAACCAGGATGAGTTGGTTGGTTCATCATCAAAAACTGCTCAGGAAGTACATGACTTTAATAGGAACAGATCAAGTTCAAAGGATGCAGGGTGTTATTCTGGCAGCGGAATTTACCATTCAAATGATGGAAGAAATCAAGTAAACCTCAGCCATGTGGTAGACCATGTAGACTTGCTGGAGAAAATTAGATGGGGAGTGGTTAGGGCGCGTTCGTCTAAAGCTCTGAGGGTGGGAGAACCTGTGCTGTCAAATACAAATCCTGACTCTCTGGAATGTCTAGATCTTCCCACTGAAAAGGAAAATGTTAAAGAGGAGAAGGAATTTGGTACATCGACCCCTCCTTCGGAAATCCAAAATGAAGATAAGGTAGATAGTTTGACAGATATCAATGAGAATTGTGATGATACTACTTCACGTCCTTTTAATCTTTCTGAGAACAGGGAAGAGCTCATAGCTTCCAGCAATTGCAGCAATAAAGATGAATCACTAGTTTCTGCTTGCATGATTCCTCAGGATACAATTCCTCCATTTGTCAGCCATGGTGAGGCTGAGCGAATACCTGAACCAAATACTGGTTTTCCTTCTGTTTCAACAAAGCTAAGGTCAAAAAGAGGTTCAAGGGATCCTGAATGTTCATCCAAGCATGAAACAAAATCTCCATTGATAAAGAATAGTGCATGTAGCACTATCGCTGACAATAATTTGAACAGTGAACAGTGTATGGTTGTCACTGAGGATGACAACAATTCGAGAGTAATATCTAATGAGGGAGAAAATGGATCACAAGAAAGAGATGCTCAGGTTATCCAAAATAGTACTTCAAATGATTCACTACAGCCACGTTCACGAAGAGATAAAATGTTTAAAGCTGTTTATAAAAGATCAAGATCACATAAGGCTTCGACGAATTCTGCTGATGGTTGTGGCTTAGGAGGATCCACTTCTAATGGGAGCAATAATAATTTCAATGCTGCAGTGGATTTCAGTAATGGGACAAATAAGGCTGTTCATAACAATGGATCCATAGAGTTGGAGCCAACCACACGTGAGCCAAATACTGAGGGGAATCTTCTTGAAGTGCAGCATGGACAAGGACATGAAGATTATATGATTAGAAGTCAACATAATGTGTCTACCAGTAGAGGACAATTCACAGAAGAAGAAAGGGGTTCTACTTCAAAATCGACTGTTGGTTTGAGGTCCACTAGGAGCCGGAGATCTAGTTATAATATTCATGAAGTTCGTGAAACAAGTCCTGTAAATAGAAGGAGACCACCACAATCAGCTAATAAAGGATCATGGTTGCTGTTATCAACTCATGAGGAAGGATGCAGATACATTCCACAACAGGGAGATGAGGTTGTATATTTGAGGCAGGGGCACCAGGAGTACGTAGATCATTATAGCCGCAAAAGAGAATCAGGGCCTTGGACATCACTTAAGGGACATATACGAGCTGTAGAATATTGTAGAGTTCAAAACCTTGAGTATGCACCAGATACGGGGTCTGGTGACGGCTGCTGCAAACTGATCCTTCTGTTTGTAGATCCTGATTCAAGTGTCGTTGGCAAATCTTTTAAATTGACTTTACCTGATGTCACTGGTTTCCCAGATTTTCTGGTTGAAAGAACTAGGTTTGATGCTGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAAAATGAGGGTGAATCTGATGGTAGTTGGTGGGATGGTCGAATTATGTGTGAAAAAGCCAAATCTTCAGAATTTCCAGACAGTCCATGGGAGAGGTATACTATTCGGTACAAGAATGACCTCACTGAAACACATTTGCACAGTCCTTGGGAGCTTTTTGATGCTGATACTCAATGGGAACAGCCTCATATTGATGATGAGATAAGACATAAGCTAGTATCCGCACTCACCAAATTACAGCAGTCAGGCAATACTATTCAGGATCGTTATGGGGTTCATGAATTGAAGAAAATTTCGAACAGGTCAAAATTTGTAAACAGGTTCCCTGTTCCGGTGTCTCTTGAATTGATACAGTCAAGGTTGGAGAACAATTACTACCGCAGATTGGAGGCACTGAAGTATGATGTGACAGTTCTGCTGTCAAATGCCGCCACATTCCTCGAAAAGGATGCAGACATGTCAGCGAAAATCAAACGCCTATCAGACTGGTTCATGCGGATATTATCATCTTTATAG 5202 0.422 MRNMAFQKYVPSGKAPIVKIKHLSISSKVSEKAQPEMTNQNHDMDVDVDLREVYFLMMHFLSAGPCQKTYVQFRNELLEHQLLPRRYHAWYSRSGARSGDEDDDGISFPLCYNKLVERYPHIEKDHLVKLLKQLLLNTASPSQGMSHGNAPNAADVPTLMGSGPFSLLSCDSDKINEEVKRPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRTRGHRNAVYCAIFDRLGRYVITGSDDRLVKIWSMETAYCLFTCRGHDGDITDLAVSSNNALVASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPGAAYHLLSSSDDGTCRIWDARHTQSSPRIYVPRPSDSVTGRSSVPSSSTLPQSHQIFCCAFNANGTVFVTGSSDNLARVWIACKLGADDTDHPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAETWKEENLPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGRSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMEFVFGMLLTGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIRIYEISHFKLVDGKFSPDGTSIILSDDVGQLYILTTGQGESQKDAKYDQFFLGDYRPVIQDSHGNVLDQETQMVPYRRNLQDLLCDSAMIPYPDPYQTEFQQRRLGALGLEWRPSSLKLAVGPDFSLDPDYVMLPLADLDVLTEPLPELIDAMDWEPEIEVFSDDTDSEYNVTEDGSSRGEHGCSSSNASGDLECSTDSSERQDPHMDSIRRSKRKKQKAETEIMTSSGRRVKKRNLDECDGNAFSSSRSRKGKGSQKVSRKKTSKSKSSRPQRAAALNALHLFSKITGTPTDGEDDSMVGDFSDSESTLQESNIDSDESDRDLQNDQLKYSKGKEVVSMYESEDMKSRELTETDTNAVNRRRLVLKLPVRDSSKPMHEFDNQDELVGSSSKTAQEVHDFNRNRSSSKDAGCYSGSGIYHSNDGRNQVNLSHVVDHVDLLEKIRWGVVRARSSKALRVGEPVLSNTNPDSLECLDLPTEKENVKEEKEFGTSTPPSEIQNEDKVDSLTDINENCDDTTSRPFNLSENREELIASSNCSNKDESLVSACMIPQDTIPPFVSHGEAERIPEPNTGFPSVSTKLRSKRGSRDPECSSKHETKSPLIKNSACSTIADNNLNSEQCMVVTEDDNNSRVISNEGENGSQERDAQVIQNSTSNDSLQPRSRRDKMFKAVYKRSRSHKASTNSADGCGLGGSTSNGSNNNFNAAVDFSNGTNKAVHNNGSIELEPTTREPNTEGNLLEVQHGQGHEDYMIRSQHNVSTSRGQFTEEERGSTSKSTVGLRSTRSRRSSYNIHEVRETSPVNRRRPPQSANKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYVDHYSRKRESGPWTSLKGHIRAVEYCRVQNLEYAPDTGSGDGCCKLILLFVDPDSSVVGKSFKLTLPDVTGFPDFLVERTRFDAAMQRNWTRRDKCRVWWKNEGESDGSWWDGRIMCEKAKSSEFPDSPWERYTIRYKNDLTETHLHSPWELFDADTQWEQPHIDDEIRHKLVSALTKLQQSGNTIQDRYGVHELKKISNRSKFVNRFPVPVSLELIQSRLENNYYRRLEALKYDVTVLLSNAATFLEKDADMSAKIKRLSDWFMRILSSL* 1734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1378 1403 - -
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1295 1316 - -
Dod03g1234 1733 CDD Bromo_WDR9_I_like 1605 1733 - -
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1244 1276 - -
Dod03g1234 1733 Gene3D - 390 559 IPR015943 GO:0005515
Dod03g1234 1733 Gene3D - 1654 1733 IPR036427 GO:0005515
Dod03g1234 1733 MobiDBLite consensus disorder prediction 904 945 - -
Dod03g1234 1733 CDD WD40 241 610 - -
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 359 - -
Dod03g1234 1733 PANTHER WD REPEAT DOMAIN 9 21 1733 - -
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1244 1316 - -
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Dod03g1234 1733 MobiDBLite consensus disorder prediction 781 890 - -
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 420 IPR001680 GO:0005515
Dod03g1234 1733 SMART WD40_4 233 272 IPR001680 GO:0005515
Dod03g1234 1733 SMART WD40_4 383 421 IPR001680 GO:0005515
Dod03g1234 1733 SMART WD40_4 433 498 IPR001680 GO:0005515
Dod03g1234 1733 SMART WD40_4 317 359 IPR001680 GO:0005515
Dod03g1234 1733 SMART WD40_4 570 610 IPR001680 GO:0005515
Dod03g1234 1733 SMART WD40_4 275 314 IPR001680 GO:0005515
Dod03g1234 1733 MobiDBLite consensus disorder prediction 814 857 - -
Dod03g1234 1733 ProSitePatterns Trp-Asp (WD) repeats signature. 597 611 IPR019775 -
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 611 IPR001680 GO:0005515
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1183 1217 - -
Dod03g1234 1733 MobiDBLite consensus disorder prediction 795 813 - -
Dod03g1234 1733 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 21 1733 - -
Dod03g1234 1733 SUPERFAMILY WD40 repeat-like 232 652 IPR036322 GO:0005515
Dod03g1234 1733 Pfam Bromodomain 1672 1719 IPR001487 GO:0005515
Dod03g1234 1733 SUPERFAMILY Bromodomain 1670 1731 IPR036427 GO:0005515
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 368 IPR001680 GO:0005515
Dod03g1234 1733 Pfam WD domain, G-beta repeat 393 420 IPR001680 GO:0005515
Dod03g1234 1733 Pfam WD domain, G-beta repeat 278 313 IPR001680 GO:0005515
Dod03g1234 1733 Pfam WD domain, G-beta repeat 320 359 IPR001680 GO:0005515
Dod03g1234 1733 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Dod03g1234 1733 Pfam WD domain, G-beta repeat 571 610 IPR001680 GO:0005515
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1378 1404 - -
Dod03g1234 1733 Gene3D - 567 666 IPR015943 GO:0005515
Dod03g1234 1733 MobiDBLite consensus disorder prediction 871 886 - -
Dod03g1234 1733 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Dod03g1234 1733 MobiDBLite consensus disorder prediction 1199 1215 - -
Dod03g1234 1733 Gene3D - 220 388 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1234 Dod-Chr3 15619491 15636651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1234 242 420 Miscellaneous Gene Families AT5G08390 22.778 6.64e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1234 K11797 - gmx:100818665 2686.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1234 03 15619491 15636651 Dod03g1234 03 15619491 15636651 ECH