Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1217 ATGGCGGAGAAGTATAACCTCAAGAACCCGGCCGTGAAGCGCATTCTTCAGGAGCTCAAGGAGATGCAATCCAACCCTTCCGATGATTTCATGAGCCTCCCTCTCGAGGAAAATATATTTGAATGGCAATTTGCAATTAGAGGACCTTGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAATTGCCTTCAGATTATCCATTCAAACCTCCTTCATTCATGTTGTTGACACCTAATGGTCGTTTTGAGACACAAACCAAGATCTGCTTGAGCATATCAAATCATCATCCTGAGCATTGGCAACCATCATGGAGTGTAAGGACTGCTCTAGTTGCACTGATTGCATTCATGCCTACCAACCCAAATGGTGCATTGGGCTCATTAGACTACAAGAAAGAAGAGAGGCGTACCTTGGCCATTAAATCTCGTGAAGTACCTCCAAAATTTGGGAATCCTGAACGTCAAAAGCTGATTGATGAGATACACGAGTACATGCTAAGCAAGGCACCCCCTGTTCCTCAACTTAGCACCACACAACCTCCTGAAGAAGATCACCCCAGAAATGACCAGGCTGAGGCCCAGTCTAATTCACATAATCCTGAGGCGTCACCCGCAGGAGAGGGGATTCCAGAGCAAGCAGGTGACAGAATTGTTGAAGAGGAGGAGGTGGTTGGTAATGCTAATCCCGCAAGAGATGAAGTTTTGCAGGCGATTCAGTCAGGTGTTTCAAGGAACCATTTGCCCCAAAATTCAGATACAAGGGTTCAAAATCTGAAGCCACAGACGAGGGTCCAGAAACCTGATGATCGGTTGTTCACATGGGCAGCTATTGGACTAACTATTGCAATTGTGGTCCTTTTGCTGAAGAAGTTCATTAAATCTTCTGAACATGGATCAGTTTTCTTGGATGGATCTTAG 927 0.452 MAEKYNLKNPAVKRILQELKEMQSNPSDDFMSLPLEENIFEWQFAIRGPCDTEFEGGIYHGRIQLPSDYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAIKSREVPPKFGNPERQKLIDEIHEYMLSKAPPVPQLSTTQPPEEDHPRNDQAEAQSNSHNPEASPAGEGIPEQAGDRIVEEEEVVGNANPARDEVLQAIQSGVSRNHLPQNSDTRVQNLKPQTRVQKPDDRLFTWAAIGLTIAIVVLLLKKFIKSSEHGSVFLDGS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1217 308 Gene3D Ubiquitin Conjugating Enzyme 2 175 IPR016135 -
Dod03g1217 308 SMART ubc_7 13 173 - -
Dod03g1217 308 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Dod03g1217 308 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
Dod03g1217 308 MobiDBLite consensus disorder prediction 172 213 - -
Dod03g1217 308 SUPERFAMILY UBC-like 11 133 IPR016135 -
Dod03g1217 308 CDD UBCc 12 127 IPR000608 -
Dod03g1217 308 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 308 - -
Dod03g1217 308 PANTHER BNAC01G21910D PROTEIN 6 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1217 Dod-Chr3 15253564 15257040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod03g1217 3 306 Miscellaneous Gene Families AT3G17000 63.836 8.78e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1217 K10578 - gmx:100798396 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1217 03 15253564 15257040 Dod03g1217 03 15253564 15257040 ECH