Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1193 ATGGAATTTGAAGCAAACGCTTCTTCTTCTTCTTCTTCTTACGCTTCTCGAAGTGGCGTCGTTTTGGACCCTCCTCCTCCTCCACCACCACCACCACTTTCACTTATTGACCCTTGTTTGCAACCATCGCCGCCACCACCTTCTGGGGTGTTTCTTCCACCCCCACAACTTCCTCTTATTCCCTTCCTGCTCAAGCCTTCTTTGATCTTCTCAATGGACCACCGAAGATCTATGTCTCTACTTCAGTACATGGCTGATGAAGGACTTGTTCCTTCTACAGAAGAGGAAGAGAAAAGGAAGAATGCCATTCAGAAGCTCAAACAGATAGTGTCATCATGGATCAAAAAGGTCGCATGGCAACATCGACTACCGAAGCACCAGATTGCTGTTACTTCTGCCACCGTATTAACATATGGATCTTATGGCCTTGGAGTTCACAGCCCTGCGTCAGACATTGATGCTTTGTGTGTAGCTCCTTTCTTTGCCTCCATTTCGGAAGACTTTTTTGATGTTTTGCACGACATGCTTAAAAGGAGGCCAGAAGTATCAGAGATTTCCTGTGTCAAGAGTGCAAAAGTTCCTCTGATGCGATTTAAAATTGATGGAATTTCGATTGACCTTCCATATGCTCGCCTTCGAGTACTATATGTTCCTGAGAATGTTGACATACTAACCCCATTCTTCATGAGGAATATTGATGAGACCAGCTGGAAAAGCTTGTCTGGAGTACGAGCAAATAAACGCATTCTTCAGCTAGTACCAAATGTTGAGAATTTTCAATCTATGGTACGGTGTCTTAAATTATGGGCAAAAAGACGAGGAGTTTATGGAACATTACTTGGTTATTTGGGAGGAATTCATTTGGCAGTTCTTGCAGCTTATGTTTGTCAAAGACATCCTGATGCCACGTTAAATGCTCTGATTATGAACTTTTTCCGAACGTTTGCATATTGGCCCTGGCCCACACCAGTGATGCTGCAGGAAGGAATGTTGCTAGCACCTGTAGATGCTATGGAAATGCGGTCCTTCATGCCTATTTTGCTGCCATCTAGCCCTTACGAGTATTGCCATTCAAATATAACTAAAAGCACTTTTTGGCGGATCAGGTCTGAGTTTGTACGTGGACATAATATGACGAGGGATCTTTTGAAGCCAGATTTCATTTGGGATAATGTATTTGAGCCTTTCCCGTACTTAAAAAGATATTCCCAGTTTGTCAAGATTTACCTCTCTATGCCCAAACAAAATGAGCTTGGAGACTGGGTTGGATGGGTCAAATCACGCTTCCGTAGTCTTCTTGTCATGCTGGAGGGTGTCCAAGGTTTCTGTGACCCTAACCCTACGGAATACGTTGACACTGAGAGAAATGAGCCGAATGTGGTTTTCTACTGGGGCTTGCAGCCTCGCAAGAATAACTTTGTGGACATAGAATTGGTAGAGAGAGAGTTCGTGAAGATAATAGTTGGCAATGGCTGTGAAGGCTCTCCTGGTAGGATGGAGTTGTCCATCCTTTCCGCTTCTCAGCTCCCTAAGAATGCACATTTTGATGGTAGGAATGTGAAGGGTAGGAAAACATGCTGGAAAGTAATTGATTATGATAAGAAAAGGAGCCAAGTTTACTCACACCATCTTCCACATTGCCTTGTAGGTCGTATGTCATCTAGTGGGGAGGGTGAGTGCCTGAGTACTGGTGGCTAG 1698 0.4411 MEFEANASSSSSSYASRSGVVLDPPPPPPPPPLSLIDPCLQPSPPPPSGVFLPPPQLPLIPFLLKPSLIFSMDHRRSMSLLQYMADEGLVPSTEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATVLTYGSYGLGVHSPASDIDALCVAPFFASISEDFFDVLHDMLKRRPEVSEISCVKSAKVPLMRFKIDGISIDLPYARLRVLYVPENVDILTPFFMRNIDETSWKSLSGVRANKRILQLVPNVENFQSMVRCLKLWAKRRGVYGTLLGYLGGIHLAVLAAYVCQRHPDATLNALIMNFFRTFAYWPWPTPVMLQEGMLLAPVDAMEMRSFMPILLPSSPYEYCHSNITKSTFWRIRSEFVRGHNMTRDLLKPDFIWDNVFEPFPYLKRYSQFVKIYLSMPKQNELGDWVGWVKSRFRSLLVMLEGVQGFCDPNPTEYVDTERNEPNVVFYWGLQPRKNNFVDIELVEREFVKIIVGNGCEGSPGRMELSILSASQLPKNAHFDGRNVKGRKTCWKVIDYDKKRSQVYSHHLPHCLVGRMSSSGEGECLSTGG* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1193 565 Pfam Nucleotidyltransferase domain 132 177 IPR002934 GO:0016779
Dod03g1193 565 SUPERFAMILY PAP/OAS1 substrate-binding domain 254 395 - -
Dod03g1193 565 MobiDBLite consensus disorder prediction 21 50 - -
Dod03g1193 565 Gene3D Poly(A) polymerase predicted RNA binding domain 397 503 - -
Dod03g1193 565 Gene3D - 72 393 - -
Dod03g1193 565 MobiDBLite consensus disorder prediction 1 50 - -
Dod03g1193 565 MobiDBLite consensus disorder prediction 1 18 - -
Dod03g1193 565 Gene3D Beta Polymerase, domain 2 91 247 IPR043519 -
Dod03g1193 565 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 396 510 IPR011068 GO:0003723|GO:0016779|GO:0031123
Dod03g1193 565 PANTHER NUCLEAR POLY(A) POLYMERASE 3 62 554 - -
Dod03g1193 565 CDD NT_PAP_TUTase 98 212 - -
Dod03g1193 565 SUPERFAMILY Nucleotidyltransferase 68 250 IPR043519 -
Dod03g1193 565 Pfam Poly(A) polymerase central domain 72 395 IPR007012 GO:0004652|GO:0043631
Dod03g1193 565 PANTHER POLY A POLYMERASE 62 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g1193 Dod-Chr3 14904682 14909406 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1193 K14376 - qsu:112002927 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1193 03 14904682 14909406 Dod03g1193 03 14904682 14909406 ECH