Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g1188 ATGACACTAGTTATTGCATCCTTGAAGTCAGTTGAGGAAGATGGTAAGGTTCTCCCAGAGTTTGCAGATGCTGAAGAAAGAGAACTCTTTGAAGCACTTGTGCTTGAGCTGGAAAGTGATATGAACGTTGATCAAATGCGTCACTATGAGATTGTTTACTTAATTCATGAGAAGCATGAGGAAGAGGTTGCAGCTGTCAATGAGAAAGTTCAAGATTTTTTGAGGGAGAAGAAAGGCAGGGTGTGGAGACTGAATGATTGGGGTATGAGAAGGCTGGCTTACAAAATAAAGAAAGCTAAAAATGCACACTATATTTTGATGAACTTTGAGTTGGATGCCAAATATATCAATGACTTCAAGACTTTATTGGACCAAGATGAAAGAGTTATTCGGCATCTTGTCATAAAGAGGGATGAGGCAATCACTGAAGACTGCCCTCCTCCTCCCGAGTTCCATTCGCTGCGTGCAAATGGAGATGATGATGAAGAAGATTATGATGATGAAGAAGAAGAAGATTGGGATGATGATGGAGGAGATTGGGATGGTGAAGATGAGGATGGTGATGGGGACGAAATTCTTGTCATAGATGGCGATGACGACGATGATGTTAATAGAGATTATAGAAATGATGCAGCAGCAAATGTTAGAAAGCCAGATGCAAGAAAATTGAAGGCTGGGAACGTAGCTAGGTAG 693 0.4113 MTLVIASLKSVEEDGKVLPEFADAEERELFEALVLELESDMNVDQMRHYEIVYLIHEKHEEEVAAVNEKVQDFLREKKGRVWRLNDWGMRRLAYKIKKAKNAHYILMNFELDAKYINDFKTLLDQDERVIRHLVIKRDEAITEDCPPPPEFHSLRANGDDDEEDYDDEEEEDWDDDGGDWDGEDEDGDGDEILVIDGDDDDDVNRDYRNDAAANVRKPDARKLKAGNVAR* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g1188 230 Pfam Ribosomal protein S6 48 136 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dod03g1188 230 CDD bS6 48 137 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dod03g1188 230 Coils Coil 56 76 - -
Dod03g1188 230 MobiDBLite consensus disorder prediction 201 224 - -
Dod03g1188 230 Hamap 30S ribosomal protein S6 [rpsF]. 46 139 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dod03g1188 230 SUPERFAMILY Ribosomal protein S6 46 146 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dod03g1188 230 MobiDBLite consensus disorder prediction 141 230 - -
Dod03g1188 230 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 9 160 - -
Dod03g1188 230 ProSitePatterns Ribosomal protein S6 signature. 88 97 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dod03g1188 230 TIGRFAM S6: ribosomal protein bS6 46 138 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dod03g1188 230 MobiDBLite consensus disorder prediction 160 200 - -
Dod03g1188 230 Gene3D - 41 144 IPR014717 -
Dod03g1188 230 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 9 160 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g1188 - - gmx:100790128 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g1188 03 14866375 14868480 Dod03g1188 03 14866375 14868480 ECH