Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g0678 ATGTCTCAGCCGTCAACCAAACGCGCCTTAGCATCATCACCAGCTACTGACACCAACAACAGCAACGGCAACAACAACAACAACAACAGCAGCAACAACGCGTCTATGAAAAAAGCCAAGTCGCAGGGCGTCGCGTGCACCTCAAACTCCAAGAACGGCCTCTTTCAGCATCACCTCAACTCCTCCTCCTCTTCAGACGACGACGTCGTTTTGGACCCTTCTTCCTCTTCCATCCTCCCCATGGCACTCGACGACGATCTCAAACCCCTCAACGACCCAAACGCACGCGCCGCCGCCGCCAATCTCTCCCGAAAGAAAGCCACACCGCCTCAGCCCGCTAAGAAGCTCCTCATCAAGCTCCACAAAGGCAAACCAACATTGCCCCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTGTGCTGTCTGTGCTATATTCTTGAAGCAACCTGATTCCTGTGACTTGGAGAAGCTTTATCAGGCTGTGAGTGATCTTTGCCTTTATAAAATGGGCGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCATTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTGGATAGGACGTATGTGAAGCAAACAACAAATGTACGATCATTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTATCTTCTGAAGTAGAACACAAAACTGTTACTGGTCTTCTACGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTCTGAAGATGTTTACTGCAGTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAGTGCACATCTGAGTTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGTTCCAGATTATTTGAAACATGTGGAGACTAGATTGCAAGAGGAACATGAAAGATGTTTGATCTACTTGGATGCAAGTACTAAGAAGCCATTGATAGCCACTGCAGAAAAGCAACTTCTTGAACGTCATATCCCTGCCATTCTTGATAAGGTTCTGATCACCACCAGCTTCTTGATTTTTCTCGGGGTTTCTCTATGCTTATGGACGGGTAATCGTATTGAAGACCTTCAGAGACTGTACTCACTCTTTTTAAGGGTCAATGCCCTTGAGTCACTAAAGCTGGCCCTAAGTTCATACATCAGGAGAACTGGGCAGGGCATTGTTATGGATGAAGAGAAAGATAAAGACATGGTTTCATCTCTTTTGGAATTTAAGGCTTCTCTTGACAGAATATGGGAAGAAAGTTTTTTCAAGAATGAAGCATTTTCTAACACCATTAAAGATTCATTTGAGCATCTTATCAATCTACGGCAGAACCGACCTGCGGAGTTGATTGCCAAGTTTTTAGATGAGAAGCTCCGTGCAGGTAATAAGGGTACTTCTGAAGAAGAATTGGAGGGTACACTTGATAAAGTCCTGGTTTTATTCAGGTTCATTCAGGGCAAGGATGTGTTTGAAGCATTCTATAAGAAAGATCTTGCGAAAAGACTGCTTTTAGGAAAAAGTGCTTCCATCGATGCGGAGAAATCTATGATATCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACCAACAAATTGGAAGGAATGTTTAAGGACATTGAATTATCAAAAGAAATAAATGAGTCCTTCAAACAGTCATCGCAAGCACGGACAAAACTCCCGTCAGGGATTGAAATGAGTGTTCATGTCCTGACAACCGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATTTAAGCAAATATAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTAAAGGCAGAGTTTCCTAAAGGGAAAAAGGAGTTGGCCGTCTCCCTATTTCAGGCAGGGCTTTCAAAACTATTGTCCTTTTTATGTTATATCATCATCTGTGTTGCTGTGAATCTCGCACTGCACTCATTTTTTTGTTGGATTAATTCTGGATGCCTGGTTGTGCTTCAGACTGTTGTTCTCATGCTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATTGAGGACAAGGAACTGAGAAGGACTCTACAGTCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGTTGCCAAAGGGTAGAGATGTGGAGGATTATGACTCATTTGTTTTTAACGAAGGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATCCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACTACTGAAAGAGTTTTCCAAGACCGTCAGTATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACCCTTCTTATTACCGAACTCTTCCAACAGCTCAAATTTCCAATAAAACCAGCTGATTTGAAGAAAAGGATTGAAAGCTTGATTGACAGAGAATATCTGGAGAGGGACAAGAACAACCCCCAAATATACAATTACTTGGCATAG 2652 0.4246 MSQPSTKRALASSPATDTNNSNGNNNNNNSSNNASMKKAKSQGVACTSNSKNGLFQHHLNSSSSSDDDVVLDPSSSSILPMALDDDLKPLNDPNARAAAANLSRKKATPPQPAKKLLIKLHKGKPTLPPNFEEDTWAKLKCAVCAIFLKQPDSCDLEKLYQAVSDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTTNVRSLWDMGLQLFRKHLSLSSEVEHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTAVGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRLQEEHERCLIYLDASTKKPLIATAEKQLLERHIPAILDKVLITTSFLIFLGVSLCLWTGNRIEDLQRLYSLFLRVNALESLKLALSSYIRRTGQGIVMDEEKDKDMVSSLLEFKASLDRIWEESFFKNEAFSNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQAGLSKLLSFLCYIIICVAVNLALHSFFCWINSGCLVVLQTVVLMLFNDAEKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDYDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g0678 883 ProSiteProfiles Cullin family profile. 488 756 IPR016158 -
Dod03g0678 883 Gene3D Cullin; Chain C, Domain 2 715 797 - -
Dod03g0678 883 Gene3D Cullin; Chain C, Domain 2 603 688 - -
Dod03g0678 883 SMART Cullin_Nedd8_2 812 877 IPR019559 -
Dod03g0678 883 Pfam Cullin family 718 784 IPR001373 GO:0006511|GO:0031625
Dod03g0678 883 Pfam Cullin family 136 681 IPR001373 GO:0006511|GO:0031625
Dod03g0678 883 Gene3D Cullin Repeats 257 371 - -
Dod03g0678 883 SUPERFAMILY "Winged helix" DNA-binding domain 795 883 IPR036390 -
Dod03g0678 883 Gene3D - 810 883 IPR036388 -
Dod03g0678 883 Gene3D Cullin Repeats 123 254 - -
Dod03g0678 883 PANTHER CULLIN-4A 91 683 - -
Dod03g0678 883 Gene3D Cullin Repeats 393 486 - -
Dod03g0678 883 Gene3D Cullin Repeats 487 598 - -
Dod03g0678 883 Pfam Cullin protein neddylation domain 815 875 IPR019559 -
Dod03g0678 883 PANTHER CULLIN 716 883 IPR045093 -
Dod03g0678 883 ProSitePatterns Cullin family signature. 856 883 IPR016157 GO:0006511|GO:0031461|GO:0031625
Dod03g0678 883 MobiDBLite consensus disorder prediction 1 49 - -
Dod03g0678 883 PANTHER CULLIN-4A 716 883 - -
Dod03g0678 883 SUPERFAMILY Cullin repeat-like 129 484 IPR016159 -
Dod03g0678 883 PANTHER CULLIN 91 683 IPR045093 -
Dod03g0678 883 SUPERFAMILY Cullin homology domain 718 798 IPR036317 -
Dod03g0678 883 SUPERFAMILY Cullin homology domain 485 681 IPR036317 -
Dod03g0678 883 SMART cul_2 518 667 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g0678 Dod-Chr3 8401602 8410850 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g0678 K10609 - tcc:18596492 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g0678 03 8401602 8410850 Dod03g0678 03 8401602 8410850 ECH
Dod03g0678 03 8401602 8410850 Dod05g2711 05 53259438 53267576 PCT