Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3719 ATGATCGTAACCGCATCACGCGACAAGTCCCTAATCCTCTGGCACCTCACCAAGGACGACCGCACCTACGGTGTTCCCCGCCGCAGGCTAACCGGCCACTCCCACTTCGTCCAAGACGTCGTCCTCTCCTCCGACGGCCAGTTCGCCCTCTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTCGCCGCCGGCAAGTCCGCCCGCAGATTCGTCGGCCACACTAAGGATGTGCTCTCTGTCGCTTTCTCCATTGATAACCGTCAGATCGTGTCGGCTTCTCGTGACCGCACGATCAAGCTGTGGAACACTCTTGGGGAGTGCAAGTATACTATTCAGGATGGTGATGCGCATAATGATTGGGTTTCCTGTGTTAGGTTTAGTCCTAGCACTGTTCAGCCTACTATTGTTTCTGCCTCTTGGGACAGGACTGTGAAAGTTTGGAACTTGACCAATTGCAAGCTGAAAAATACTCTTGCTGGGCATGCTGGGTATGTGAACACGGTAGCAGTTTCACCTGATGGTTCGCTCTGTGCTAGTGGGGGCAAAGATGGGGTTATTTTGCTGTGGGATTTGGCAGAAGGAAAGAAGCTTTACTCACTTGATGCTGGTGCAATTATCCATGCTCTGTGCTTTAGCCCTAATAGGTACTGGCTATGTGCTGCCACTGAGCAGAGTATTAAGATCTGGGATTTGGAGAGTAAGAGCATTGTGGAGGATTTGAAGGTTGACCTCAAGACTGAGGCTGATGCCACTACCGGTGGGAACACTACAAAGAAGAAGGTTATCTATTGCACAAGTTTGAACTGGAGCGCAGATGGAAGCACATTGTTCAGCGGCTACACTGATGGTGTGATCAGAGTTTGGGGAATTGGACGTTATTAG 888 0.5191 MIVTASRDKSLILWHLTKDDRTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLAAGKSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHNDWVSCVRFSPSTVQPTIVSASWDRTVKVWNLTNCKLKNTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLDAGAIIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLKTEADATTGGNTTKKKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3719 295 CDD WD40 1 290 - -
Dod02g3719 295 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Dod02g3719 295 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Dod02g3719 295 PRINTS G protein beta WD-40 repeat signature 91 105 IPR020472 -
Dod02g3719 295 Pfam WD domain, G-beta repeat 70 104 IPR001680 GO:0005515
Dod02g3719 295 Pfam WD domain, G-beta repeat 267 290 IPR001680 GO:0005515
Dod02g3719 295 Pfam WD domain, G-beta repeat 26 62 IPR001680 GO:0005515
Dod02g3719 295 Pfam WD domain, G-beta repeat 157 192 IPR001680 GO:0005515
Dod02g3719 295 Pfam WD domain, G-beta repeat 117 150 IPR001680 GO:0005515
Dod02g3719 295 Pfam WD domain, G-beta repeat 199 232 IPR001680 GO:0005515
Dod02g3719 295 Gene3D - 1 295 IPR015943 GO:0005515
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 201 IPR001680 GO:0005515
Dod02g3719 295 SUPERFAMILY WD40 repeat-like 2 290 IPR036322 GO:0005515
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 30 71 IPR001680 GO:0005515
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 104 IPR001680 GO:0005515
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 295 - -
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 104 - -
Dod02g3719 295 ProSitePatterns Trp-Asp (WD) repeats signature. 137 151 IPR019775 -
Dod02g3719 295 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 295 IPR045223 GO:0015935|GO:0043022
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 159 IPR001680 GO:0005515
Dod02g3719 295 ProSitePatterns Trp-Asp (WD) repeats signature. 49 63 IPR019775 -
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 197 - -
Dod02g3719 295 SMART WD40_4 257 291 IPR001680 GO:0005515
Dod02g3719 295 SMART WD40_4 153 192 IPR001680 GO:0005515
Dod02g3719 295 SMART WD40_4 23 62 IPR001680 GO:0005515
Dod02g3719 295 SMART WD40_4 106 150 IPR001680 GO:0005515
Dod02g3719 295 SMART WD40_4 195 232 IPR001680 GO:0005515
Dod02g3719 295 SMART WD40_4 65 104 IPR001680 GO:0005515
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 24 IPR001680 GO:0005515
Dod02g3719 295 ProSitePatterns Trp-Asp (WD) repeats signature. 179 193 IPR019775 -
Dod02g3719 295 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 1 295 - -
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 295 IPR001680 GO:0005515
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 30 63 - -
Dod02g3719 295 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3719 Dod-Chr2 75940916 75943839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3719 111 292 Miscellaneous Gene Families AT5G08390 25.000 3.16e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3719 K14753 - gmx:100778205 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3719 02 75940916 75943839 Dod02g3719 02 75940916 75943839 ECH