Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3005 ATGGCTCCTCCTAGAGGTCGTGGTGGTGGTGGAGGGTTTAGGGGTGGCAGAGGAGACAGAGGTAGAGGGAGAGGTGGTGGTGGAGGAAGAGGAGGAGATAGAGGTACCCCATTCAAAGCTCGAGGTGGTGGTAGAGGTGGAGGAGGAGGAGGAGGAAGGGGTGGTCGTGGTGGAGGTAGGGGCGGCGGCCGTGGAGGCAGGGGTGGAGGAATGAAAGGAGGGAGCAGGGTTGTTGTTGAGCCTCACAGACATGAAGGGATTTTCATTGCCAAGGGTAAAGAAGATGCACTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGGTCGTTGTGCAGAATGAGGATGGCGCAAAAGATGAGTACAGAGTTTGGAACCCTTTTCGCTCCAAGCTGGCAGCTGCCATCCTTGGTGGGGTTGACAACATATGGATAAAACCTGGAGCCCGGGTACTTTACCTGGGGGCTGCTTCTGGGACAACTGTATCTCATGTGTCTGACATTGTTGGTCCAACAGGAGTTGTCTATGCTGTAGAATTCTCTCATCGAAGTGGGCGTGACTTGGTCAATATGGCTAAGAAGCGTACCAATATTATACCCATCATTGAAGATGCTAGACATCCAGCAAAGTACAGGATGTTGGTTGGCATGGTAGATGTGATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGAATCTTGGGGCTGAATGCATCATATTATCTCAAAGCAGGAGGTCATTTTGTTATTTCAATCAAGGCGAACTGCATAGACTCTACAGTACCTGCTGAGTCAGTGTTTGCTAGTGAAGTAAACAAGCTGAAGGCAGATCAGTTTAAGCCTTTTGAGCAAGTCACCCTTGAACCATTTGAGCGCGACCATGCTTGTGTTGTTGGTGGATACAGAATGCCTAAGAAGAAAAAGGATACCGAGTAG 948 0.4895 MAPPRGRGGGGGFRGGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGGGGGGRGGRGGGRGGGRGGRGGGMKGGSRVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVVVQNEDGAKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAESVFASEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDTE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3005 315 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 5 312 - -
Dod02g3005 315 PIRSF Nop17p 42 309 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PANTHER BNAA03G47570D PROTEIN 5 312 - -
Dod02g3005 315 PRINTS Fibrillarin signature 177 194 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PRINTS Fibrillarin signature 152 173 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PRINTS Fibrillarin signature 232 261 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PRINTS Fibrillarin signature 125 144 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PRINTS Fibrillarin signature 284 305 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PRINTS Fibrillarin signature 202 231 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 PRINTS Fibrillarin signature 97 116 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 Gene3D Phosphorylase Kinase; domain 1 74 129 - -
Dod02g3005 315 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 93 306 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 Pfam Fibrillarin 79 306 IPR000692 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 Gene3D Vaccinia Virus protein VP39 130 307 IPR029063 -
Dod02g3005 315 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 303 IPR029063 -
Dod02g3005 315 MobiDBLite consensus disorder prediction 1 76 - -
Dod02g3005 315 ProSitePatterns Fibrillarin signature. 177 191 IPR020813 GO:0003723|GO:0006364|GO:0008168
Dod02g3005 315 SMART Fibrillarin_2 79 307 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3005 Dod-Chr2 63648742 63652277 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3005 K14563 - gmx:100797625 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3005 02 63648742 63652277 Dod02g3005 02 63648742 63652277 ECH