Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1519 ATGCGCATCAACATGAAAACATATCTCCTCTCACTGTTACTCCTCTTTCTCCTTGTGCACACATCTGAAGCACAGCTTTTGCCGATCCTGGCAAAACTTTGGAAGAGCCCTTACGTCAAGGCATTTGTGAGCAAAGCTGCAGAAAAAGTAGCTGAAGAGGTGGTGCAGAACTGGCTGAACAATTCCAAGAACCATCAGAACGGCCCTCCTCCCCCTGCCCAAGCGCCGCCGCCGGACAACTCCGTCTACGGCCCTTACCCTGCCCCAGCCCCAGACGAGATCCGTTTCGTGAAACAGTATTTGAGCAATTACGGATACATCACCTACTCCGATGACCATTCCCTGGACGAGGAGACCGTATCAGCCATCAAGGAGTTCCAGCGGTTGTTCGATTTGCCCAGTACCGGCATCCCAGACGACAAGACTCTTTACCGAATGTTATGGCAACGCTGTGCCGTCCCCGACAAGAATCTCAGTTACGACCTCTCCGCAACCAATAACGTGTCGTGGCCTCTAGGGACAAAGTGGTTCCCTAACGACGGCAGCACGAACAACAACCTTACCTACGGTTTCGCTCCGGGTAACAACCTCACAGAAGACGTCATCAAGGTGTTCCAGGATTCCTTCCAGCGGTGGTCGGATGCCATAGGAGTGCTCAATCTCACGGAGGCAGATTACAATGTTGCTGACATCAGGATTGGGTTCGAAGACTTCAGCGACACCGAGGGAGGGATATGGTTAAGGATGGTGGGGGGAACCTTTATACAATTGCAAGAGGGTGATGATCATGATTCTCAAGAAGCAAATAATGATAATAATGTTACCTTTGGGATCATGGTTCTGGATGTTGACAAGATATGGGCGCTGCCAACTGACAAGGTTGACGAATTGTTGTGGGAGTATGATATTGTTGACTTGGAGACTGTGGTGATGCACCAGATTGGCCATCTTCTGGGGCTTAACCATTCCGACCACGCAGACTCGGTGATGTACCCTTATATTCTTCCCTCACGGCAGAGGAAGGTGGAGCTCTCGGACGATGACAAAGGGCATATCCAGCAGGTTTATTTCTCTGGTGGCAGTAGGGGTTTCACTCTTGTTGGCACCAGTTGGGGGCTCCTTACCACCACTTTGTCACTTGGATTTGCAGCATGCATGGTTCTCTTCTACTAG 1173 0.5064 MRINMKTYLLSLLLLFLLVHTSEAQLLPILAKLWKSPYVKAFVSKAAEKVAEEVVQNWLNNSKNHQNGPPPPAQAPPPDNSVYGPYPAPAPDEIRFVKQYLSNYGYITYSDDHSLDEETVSAIKEFQRLFDLPSTGIPDDKTLYRMLWQRCAVPDKNLSYDLSATNNVSWPLGTKWFPNDGSTNNNLTYGFAPGNNLTEDVIKVFQDSFQRWSDAIGVLNLTEADYNVADIRIGFEDFSDTEGGIWLRMVGGTFIQLQEGDDHDSQEANNDNNVTFGIMVLDVDKIWALPTDKVDELLWEYDIVDLETVVMHQIGHLLGLNHSDHADSVMYPYILPSRQRKVELSDDDKGHIQQVYFSGGSRGFTLVGTSWGLLTTTLSLGFAACMVLFY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1519 390 Pfam Matrixin 184 356 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Dod02g1519 390 MobiDBLite consensus disorder prediction 61 84 - -
Dod02g1519 390 SMART col_5 172 358 IPR006026 GO:0006508|GO:0008237|GO:0008270
Dod02g1519 390 Gene3D Collagenase (Catalytic Domain) 89 359 IPR024079 GO:0008237
Dod02g1519 390 SUPERFAMILY PGBD-like 89 156 IPR036365 -
Dod02g1519 390 Pfam Putative peptidoglycan binding domain 92 146 IPR002477 -
Dod02g1519 390 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 184 356 - -
Dod02g1519 390 MobiDBLite consensus disorder prediction 69 84 - -
Dod02g1519 390 PANTHER MATRIXIN PROTEIN 94 358 - -
Dod02g1519 390 PRINTS Matrixin signature 309 334 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod02g1519 390 PRINTS Matrixin signature 344 357 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod02g1519 390 PRINTS Matrixin signature 146 159 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod02g1519 390 PANTHER MATRIX METALLOPROTEINASE 94 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1519 Dod-Chr2 18434973 18436375 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1519 - - gmx:548001 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1519 02 18434973 18436375 Dod02g1519 02 18434973 18436375 ECH