Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1516 ATGGGACTTCTTCAATGTCCCCTTTGTTGCCACACACAGCAGCAGCACGATCATCACCAACAACAAGAATCACAACCTCACTCCAATCACCTTCATTCAGAATCATCGACCTCTTCCTCCCTCTCTTCACAGCCAAGCCTACCCTCAGTTCCTTCCCTCACCCCGCAACAATCTCATCACCACCCTCAACCGCCCCGAATAACCGCACGCCACCAACTCCTAACCAACATCAAAGGCAACTCCTCCGCCATCTTCTCCCTCGCTCTCCACGGAAAGTTCCTCTATAGCGGCTCCTCCAACAGCGAGATTAGGACATGTAGAAGAGACCCTTTTGCTCTTCAAACCTCAAACAACAGCACCAACACTGCCAGCAACAACAGCAACGTTGAGGTTGCAATCAGCAAGGGAGCCGTGAAGTCAATGATCGTTTTGATGAATGACAAGCTAATCACCGCTCACCAAGACCACAAAATTCGCGTTTGGAAAACCGAAAACGATGATGACCAAATCCAAAACCAAAGGCACTACTACAAATGCATAGCAACACTTCCAACCTTCAACGACCGATTCTCGAAGCTCTTCTCCTCAAAGAACTACGTGGAGGTTCGGCGGCACAAGAAGTGCACTTGGGTTCACCACGTGGACACCGTTTCCGCTCTCGCTCTCTCCCACGACGGCTCTCTCCTTTACTCCGCTTCGTGGGACAGGACGTTCAAGATTTGGCGAACATCGGATTTCAAGTGCTTAGAATCCGTCAGGAATGCGCACGAGGATGCAATCAATGCCTTGGCTCTGTCACGTGACGGGTTTGTTTACACTGGCTCAGCGGATAAGAAGATCAAGATATGGAACAAGGGTGCTGGTGAGAAGAAGCATAAGCTTCTGGGGACCTTGGAGAAGCACAAATCAGCTGTGAATGCCTTGGCACTTAGCATAGATGGGTCAGTGTTGTATTCTGGAGCTTGTGACAGGTCAATTTTGGTGTGGGAGAAGAAGGAAATAGTGGTGATGATGATGGTGAGAGTGAGATAA 1032 0.4952 MGLLQCPLCCHTQQQHDHHQQQESQPHSNHLHSESSTSSSLSSQPSLPSVPSLTPQQSHHHPQPPRITARHQLLTNIKGNSSAIFSLALHGKFLYSGSSNSEIRTCRRDPFALQTSNNSTNTASNNSNVEVAISKGAVKSMIVLMNDKLITAHQDHKIRVWKTENDDDQIQNQRHYYKCIATLPTFNDRFSKLFSSKNYVEVRRHKKCTWVHHVDTVSALALSHDGSLLYSASWDRTFKIWRTSDFKCLESVRNAHEDAINALALSRDGFVYTGSADKKIKIWNKGAGEKKHKLLGTLEKHKSAVNALALSIDGSVLYSGACDRSILVWEKKEIVVMMMVRVR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1516 343 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 29 341 IPR045182 -
Dod02g1516 343 Gene3D - 32 174 IPR015943 GO:0005515
Dod02g1516 343 Gene3D - 186 338 IPR015943 GO:0005515
Dod02g1516 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 330 IPR001680 GO:0005515
Dod02g1516 343 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Dod02g1516 343 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Dod02g1516 343 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Dod02g1516 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 284 IPR001680 GO:0005515
Dod02g1516 343 SUPERFAMILY WD40 repeat-like 67 330 IPR036322 GO:0005515
Dod02g1516 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 330 - -
Dod02g1516 343 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 29 341 - -
Dod02g1516 343 Pfam WD domain, G-beta repeat 211 241 IPR001680 GO:0005515
Dod02g1516 343 Pfam WD domain, G-beta repeat 293 329 IPR001680 GO:0005515
Dod02g1516 343 Pfam WD domain, G-beta repeat 247 284 IPR001680 GO:0005515
Dod02g1516 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 241 - -
Dod02g1516 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Dod02g1516 343 MobiDBLite consensus disorder prediction 26 65 - -
Dod02g1516 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 284 - -
Dod02g1516 343 MobiDBLite consensus disorder prediction 17 65 - -
Dod02g1516 343 SMART WD40_4 127 162 IPR001680 GO:0005515
Dod02g1516 343 SMART WD40_4 245 284 IPR001680 GO:0005515
Dod02g1516 343 SMART WD40_4 291 330 IPR001680 GO:0005515
Dod02g1516 343 SMART WD40_4 203 242 IPR001680 GO:0005515
Dod02g1516 343 SMART WD40_4 70 107 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1516 Dod-Chr2 18387386 18388417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1516 204 330 Miscellaneous Gene Families AT5G08390 29.008 2.12e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1516 - - gmx:100784166 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1516 02 18387386 18388417 Dod02g1516 02 18387386 18388417 ECH