Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1470 ATGGCGGCAGAAGAGACTGTGATTGAGTCCACCGATTTCCCAGTGAAGAGGCAAAGGGAGAACGAACAGAATGGAGTCTCAGCTTCCACCCTCTCAGCTGAAACCAACGACTCTCATGGCATCTCAACCGTTATCCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCTGGGGAGGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGACTTCCAGAATGTCATGGTCTTTCAGTCATCAACGTATGGCAAGGTCCTCGTTCTGGATGGAGTCATTCAGCTGACAGAAAGGGATGAATGTGCCTATCAGGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCTAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCTTGCGGGAAGTATCACGCCATTCTTCAGTGGAAAAGATAGACATTTGTGAAATAGACAAGATGGTTGTTGATGTCTCAAAACAATTTTTCCCGGATATAGCTGTAGGTTTTGAGGACCCGCGTGTGACACTTCATGTTGGTGATGGAGTTGCATTTTTGAAGGCAGTCCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCATTTTTTGAGTCGGTTGCGAAGGCTCTTCGTCCAGGAGGTGTTGTGTGTACTCAAGCAGAAAGTATTTGGCTTCATATGCATATCATTGAAGACATAGTGGCAAATTGTCGCCAGATATTCAAAGGTTCTATCAACTATGCTTGGACCACAGTCCCTACATACCCAAGTGGGATGATTGGTTTCATGCTTTGCTCAACTGAGGGGCCTGCTGTCGATTTCAAGCATCCGGTGAATCCCATTGATGAAAATGAGGGTCAGCAGTCAGCAAGACCACTGAAATTTTACAACTCTGAGATTCATACAGCATCTTTCTGTTTGCCATCTTTTGCTAAGAGGGCCATTGGTCCTAAGGCAAACTGA 1011 0.452 MAAEETVIESTDFPVKRQRENEQNGVSASTLSAETNDSHGISTVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDFQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLHVGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSINYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNPIDENEGQQSARPLKFYNSEIHTASFCLPSFAKRAIGPKAN* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1470 336 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 125 138 IPR030373 -
Dod02g1470 336 Gene3D Spermidine synthase, tetramerisation domain 40 98 IPR037163 -
Dod02g1470 336 PANTHER SPERMIDINE SYNTHASE-RELATED 3 336 - -
Dod02g1470 336 Hamap Polyamine aminopropyltransferase [speE]. 47 332 IPR001045 GO:0003824
Dod02g1470 336 Pfam Spermidine synthase tetramerisation domain 47 101 IPR035246 -
Dod02g1470 336 Gene3D Vaccinia Virus protein VP39 99 336 IPR029063 -
Dod02g1470 336 MobiDBLite consensus disorder prediction 20 34 - -
Dod02g1470 336 PIRSF Spermidine_synth 36 336 IPR030668 GO:0006595
Dod02g1470 336 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 336 IPR001045 GO:0003824
Dod02g1470 336 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 46 283 IPR030374 -
Dod02g1470 336 TIGRFAM speE: spermidine synthase 48 326 IPR001045 GO:0003824
Dod02g1470 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 44 331 IPR029063 -
Dod02g1470 336 Pfam Spermine/spermidine synthase domain 104 291 - -
Dod02g1470 336 MobiDBLite consensus disorder prediction 1 34 - -
Dod02g1470 336 CDD AdoMet_MTases 124 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1470 Dod-Chr2 17554341 17558550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1470 K00797 - gmx:100790506 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1470 02 17554341 17558550 Dod02g1470 02 17554341 17558550 ECH