Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1421 ATGGCAGCGTCTTTGGGATTGTTCCCCACAATGACCTTTGTGGCGGCAGATAAGCCCTCCGGCTCGGGGCTGAGCCTGAGGCCTGTGCAGGTGCAGCCTCCAATGGCGAAGGTGCGGATGGTGCGAGCGGTGACCTCAGCAACGGTGTCCGAACCTCCTTCGAACCCAAAGGTTCGGGGAATCATGAAGCCCCGCAAAATATCTCCCGAGATGCAAGCCATCTGCGGCGTTTCCGAGATTCCTCGAACCCAAGCTCTCAAGCACATTTGGGCCTACATCAAGGACAACAACCTCCAGGACCCTGAAAACAAGAGGGTTATAATTTGTGATGAAAAGCTGAAGAAGATATTTGCTGGGAGAGATCAAGTTGGCATGCTTGAGATTGCTGGATTGATTAGCCCTCACTTCCTTAAATGA 417 0.5276 MAASLGLFPTMTFVAADKPSGSGLSLRPVQVQPPMAKVRMVRAVTSATVSEPPSNPKVRGIMKPRKISPEMQAICGVSEIPRTQALKHIWAYIKDNNLQDPENKRVIICDEKLKKIFAGRDQVGMLEIAGLISPHFLK* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1421 138 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 24 137 - -
Dod02g1421 138 SUPERFAMILY SWIB/MDM2 domain 58 138 IPR036885 -
Dod02g1421 138 SMART swib_2 61 138 IPR019835 -
Dod02g1421 138 Pfam SWIB/MDM2 domain 63 136 IPR003121 -
Dod02g1421 138 ProSiteProfiles SWIB/MDM2 domain profile. 60 138 IPR003121 -
Dod02g1421 138 PANTHER EXPRESSED PROTEIN-RELATED 24 137 - -
Dod02g1421 138 CDD SWIB-MDM2_like 65 136 - -
Dod02g1421 138 Gene3D SWIB/MDM2 domain 55 138 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1421 Dod-Chr2 17012788 17015541 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Dod02g1421 SWIB 8.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1421 - - lja:Lj1g3v0050930.1 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1421 02 17012788 17015541 Dod02g1421 02 17012788 17015541 ECH