Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1405 ATGGAGAGTACTCAAACCAACGACGACGGTGCTCCTTCTCGTCCATGGCAGTCCTACCACACTGTTTACACCACCGCCAAAGCAGGAATGGATGGCGTTGACAAGGAGAAGGTTCAAAGGATAGTGTATGAAATGAGCAAAGGATCCAAGTATTTTCAGAACGAGGAACGCAAGGAGGCTTTTATTAAGCAGAGGATCGACAACCTCCGAACTCAGTGTGCTAACCTTACACAACCAGACTTATCCTATTACCAGAAGGTGGCTGAAAAAAGAATCCTTGAGCTAGAAGCTTCACGGGATCTTTCAAGGATATGGCTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAACTAACCCTACATTAAAGGGCAAGCCAATGGCAGTTGGTAGCATGTCTATGATATCCACTGCCAATTACGAGGCTAGGAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAACTTTGTCCAGAATTGATATTTGTCCCAGTCGATTTCAAGAAGTATACTTGTTACAGTGATTTGACCAGACAAGTTTTTCGGAGGTATGATCCCAATTTCATGGCTGCTAGCCTTGATGAAGCATACCTTGATATAACTGAAGTTTGCAAAGAAAGGAATGTCAAAGGCGAAGAAATTGCCGAAGAACTCAGAGCTGGTGTTTATGAAGAGACTGGTCTCACATGTAGTGCTGGAGTGGCACCAAATCGCTTGCTTGCTAAGGTTTGCTCAGACATTAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTCATATCCTCCCTTCCTATCAGAAAGATTGGGGGCATTGGTAAGGTCACTGAACACATTTTGAAGGGTGTTTTTGGAATTAACACGTGTGAGCAGATGCTGGAGAAGGCTAGCTACCTCTGTGCTCTTTTTTCTCGGTCAACAGCAGATTTTTTTTACTCTGTGGGTTTAGGTCTTGGGAAGACAGATTCTCCCCAAGAAAGATTTCGCAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACCAAGGATGAAGTGCTGTTGTATCAAAGATTGGCCGAGCTTGCTGAAATGCTGTCCACAGACATGCAAAAAGAGGGCCTGCGTGGGCGAACATTGACTCTAAAACTAAAAACAACTTCTTTTGAGGTTCGGTCTAGAGCTGTGACTTTAGGAAAGTACATTAGCTCAAGTGAGGATATCTTGGAGCATGCTTCAAAGCTGCTAAAAGCTGAACTTCCTATCTCAATAAGACTAATAGGCCTTAGAATATCACACTTTGATGGAGAGAAGTATGGTGGTGCTACATCTGATCCAAAACAGAAGACCATTACCAACTTCATTACTTCAGTAGATGCCAATAGGAACTGTTCTTTCCCAGATGTTGCAGATCTTGACTTTGCCAGTGATGCAGAAACTGGTCTTTCCATTGACGGTCGGCAGACATCTCACAATGATTGCAGAGATTCTTTTGAAGGGAATCAGTCATCAGATGTAGATTGCCAGAGTTGCACTTTCCAGAAAAGTGATGGTTCAGAGGAGGTGCAAAGGCCTGGCAACGATGCTTCTCGTCCTAACTATGGTGGAGTTGAAGAAGCAGTGGGATCAACTTTTTCATTTCAGGGACAGTTCGAGAGGTCTAATCTCTTGGAGGATGAGCAACTTAATTCTTGTGAGGAAAAGACAATCTTGTGGTTGAATGACTACAAATGCTCACTTTGTGGAACAGAACTGCCTCCTAGTTTTGTTGAGGAAAGATTAGAGCATTCTGATTATCATCTAGCCGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAAAGAACATCTGTTCCGAGTCAAAGTCGGGATCAGAAGGATCGAATCATTAGACAAAGTAAATCCAAGAAGCAAAAGCTGTCGCAGAAAGAAGGAAGTTATAAACCCATTGATTGTTTTTTCGTTAAAGAGTAA 1986 0.427 MESTQTNDDGAPSRPWQSYHTVYTTAKAGMDGVDKEKVQRIVYEMSKGSKYFQNEERKEAFIKQRIDNLRTQCANLTQPDLSYYQKVAEKRILELEASRDLSRIWLHVDMDAFYAAVETLTNPTLKGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPVDFKKYTCYSDLTRQVFRRYDPNFMAASLDEAYLDITEVCKERNVKGEEIAEELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILKGVFGINTCEQMLEKASYLCALFSRSTADFFYSVGLGLGKTDSPQERFRKSISNERTFSATKDEVLLYQRLAELAEMLSTDMQKEGLRGRTLTLKLKTTSFEVRSRAVTLGKYISSSEDILEHASKLLKAELPISIRLIGLRISHFDGEKYGGATSDPKQKTITNFITSVDANRNCSFPDVADLDFASDAETGLSIDGRQTSHNDCRDSFEGNQSSDVDCQSCTFQKSDGSEEVQRPGNDASRPNYGGVEEAVGSTFSFQGQFERSNLLEDEQLNSCEEKTILWLNDYKCSLCGTELPPSFVEERLEHSDYHLAEKLQKEESRIHQRTSVPSQSRDQKDRIIRQSKSKKQKLSQKEGSYKPIDCFFVKE* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1405 661 Gene3D - 261 334 - -
Dod02g1405 661 Pfam impB/mucB/samB family C-terminal domain 341 441 IPR017961 GO:0003684|GO:0006281
Dod02g1405 661 Pfam Ubiquitin-Binding Zinc Finger 579 612 IPR041298 -
Dod02g1405 661 MobiDBLite consensus disorder prediction 612 648 - -
Dod02g1405 661 Coils Coil 52 72 - -
Dod02g1405 661 ProSiteProfiles UmuC domain profile. 105 285 IPR001126 GO:0006281
Dod02g1405 661 Hamap DNA polymerase IV [dinB]. 102 455 IPR022880 GO:0003887
Dod02g1405 661 Gene3D - 23 109 - -
Dod02g1405 661 Pfam IMS family HHH motif 268 298 IPR024728 -
Dod02g1405 661 MobiDBLite consensus disorder prediction 489 508 - -
Dod02g1405 661 PANTHER DNA POLYMERASE KAPPA 8 639 - -
Dod02g1405 661 MobiDBLite consensus disorder prediction 612 635 - -
Dod02g1405 661 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 339 436 IPR036775 GO:0003684|GO:0006281
Dod02g1405 661 ProSiteProfiles Zinc finger UBZ3-type profile. 575 612 IPR041298 -
Dod02g1405 661 CDD PolY_Pol_IV_kappa 106 438 IPR022880 GO:0003887
Dod02g1405 661 PIRSF DNA_pol_eta 97 218 - -
Dod02g1405 661 PIRSF DNA_pol_eta 214 434 - -
Dod02g1405 661 PIRSF DNA_pol_eta 446 661 - -
Dod02g1405 661 Gene3D - 122 170 - -
Dod02g1405 661 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 8 639 - -
Dod02g1405 661 Gene3D - 110 260 IPR043128 -
Dod02g1405 661 Pfam impB/mucB/samB family 108 252 IPR001126 GO:0006281
Dod02g1405 661 SUPERFAMILY DNA/RNA polymerases 80 333 IPR043502 -
Dod02g1405 661 Gene3D - 338 443 IPR036775 GO:0003684|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1405 Dod-Chr2 16905528 16910580 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1405 K03511 - gmx:100816973 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1405 02 16905528 16910580 Dod02g1405 02 16905528 16910580 ECH