Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1054 ATGGATGAAAACCTCTTTCATGAGCAAAAAGTTCCAGCTGGTTGCATAACCGGAATAAAGTTTGACCTGTTATCTGAGGCAGATCTAGACAAGATCTCAACTTTGGAGATAACCACAGCTGGGCAGGTCAATTGTTCTGATTTGGGACTTCCAAATCCATCTCAAGAGTGCAGCACTTGTGGTACTAAAGATAGAAATTGTTGTGAAGGTCATAATGGAGTAATTAAATTTCCTATTTCCATACCCCATCCGTATTTTCTATCAGAGATTGCACAACTCTTGAACAAAATCTGTCCTGCATGTAAATCTATTCGATGGACCAAGGGTGCTCAATTAATCCTTGGAACCAAGCGGTATTATGGTTGCAAATATTGTTCTGGAAATACTTATCCAACAATGAAATTCAGAGTTTCCTCCAATGATCTGTTCAGAAGAACTGCAATTATTGTTGAAATAAATGAAAGGTCTTCAAAGGCGAAGAAAATTTTGGGGCAAAGGTTACCTGCGGATTATTGGGATTTTATTCCTCCAGATGCTCAACAAGAAGAAAGTTGTATCAAATCAAATAGAAGGGTTTTATCACCTAGTCAGGTTCATTATTTGTTGAATGATGTTGATCCAAACTTCGTGAAAAAATTTGTTCCTCGAGTGGATTTGCTTCGTCTTAATTGCTTCCCGGTGACACCAAATTGCCATCGTGTGACAGAAGTCATGCATGTATGTTCTAATGCAAACCGGTTGAGTTTTGATGACAGGACCAGGGCTTGCAAGAAATTAGTTGATTTCCGGGGCACTTCTAATGAGTTAATTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGCTAAATCCTGATAAAACACCTAGTGATATTTTTGCTGATATCCGGCAAAGGAAAAATGCAGAAAATGCTTGCAATTCCTCTGGTTCGAGATGGATGAAAGATGTGGTTCTTGGAAAACGCAATGATAGTTCATTCCGTACTGTAGTAGTTGGTGACCCAGACCTTGATCTTGATGAAATTGGTATACCTTGTCAAATTGCAGAAAGTTTGCTGGTCTCTGAGTGCGTGAACAAGCAGAATTGGGAAAAACTGCTTGATTGTTGTGAGGTACGGATGATAGAGAAGGGACAGATAAAGGTCAGCAGAAAGGGTAGTCGAATTATACTGTACAAAAAGGAAGATCTTCAGATAGGAGACATGTTTTATAGGCCTCTTGTTGACGGCGATAAAGTTTTGATAAATAGGCCGCCTTCCATACATCAACATTCAATGATTTCTCTCTCAGTTAAAGTTCTTCCAATATCTTCTGCAGTATCTATCAACCCGCTCTGTTGTTCTCCACTGCGTGGGGATTTTGATGGTGATTGCCTTCATGGCTATATTCCACAATCGGTTGCTGCGAGAGTTGAGCTTAATGAGCTGGTTGCTTTAGATAAACAATTGATTAATGGCCAAAGTGGTAGAAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCTCACTTGCTCATGGAAGATGGGATCCTTTTAAATGTTTACCAAATGCAGCAGCTTCAGATGTTTTGCCCTCATAATTTAGTACTTCCTGCTATTGTTAAAGCTCCTTCAAGTGATACCTCAATTTGGACTGGCAAGCAAGTGCTCAGCATGCTGTTTCCTTCTAACTTTGACTATTCTTTTCATTCAAATGGAGTTTTGGTCAGAAATGGCGAGCTTGTATCTTCTTCTGAGGTTTCTGGTTGGTTACGTGATTCTGAATGTAATGTTTTCCAGAGTTTTGTGGAACAATTTCAGGGGAAAACTCTAGACTTTTTGTATGCTGCGCAGAAAGTTCTTTGTGAGTGGTTGTCTATGACTGGTTTTACAGTGTCACTTGCCGACTTGTACCTTGCTTCTGACCCCTATGCACGGAAAAATATGATGGAGGAAATCTCCTACGGCTTACAAGAAGCAGAGCAGGCATGTAATTACAAACAGTTGTTAGTAGATTACTATCATGACTTTCTGGCAGGAAATGTTGAAGGAAATGAAAATGCTATGACTGATGTGGTTCGTCTGAATTATGAAAGGCAAGTATGTGCTGCTCTCAGTCAAGGGTCAGTTGATGCGTTTAGACAGGTTTTTCGCAATATTCAAAGTTTAGCCGACAGATATGGAAGTAAGGGCAATTCTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTACTGAAACTAGTGCAACATTCCATGTGTCTTGGTCTGCAACATTCCCTGGTTCGCTTGTCATACAAAATTCCCCATCAGCTGTCATGTGCTGCTTGGAATAATGAAAAAGGGCTTGATTCAATACAGATGTTTTCTGGTACTTCTGAATCTGTTCAATCTTACATCCCATGCGCTGTTGTTGAAGGCTCTTTTCTGACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACAATGCAGACCTTCCTGGAACATTAACACGTAGACTTATGTTTTTCATGCGTGACCTGATTGATACATATGATGGAACAGTCAGAAATTTATATGGTAATCAAATTGTTCAGTTTTCTTATGATTCTGGTGAGGATTCATCTGCTGATTGCCGTCTCCAAGAGACTACTATTGGTGGCGAACCAGTGGGAGCACTTTCTGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAATCAGTCTACTTGAAACATCACCTTTGTTGAATTTGAAAAATGTTCTGGAGTGTGGTTCAAAGAAAAGAAGTGGCGATCAGACTGTGTCTTTATTTTTGTCTGACAAATTTCGTAATCGGAGGTATGGGTTTGAGTATGCAGCCTTTGATGTGAAGAATTATTTGGAAAGAATGATGTTCTCAGACATCGTTTCTACTGTCATGATAATATTCACTCCACACTCCAACCAGGAGAAGAACAGCCCTTGGCTTTGCCATTTTCATTTAGACAGGGAAATTGTTCAAAGAAGAAACCTGAAAGTGAGTTCCATCATTCACTCTCTTAAGAAGAGATGTGATTTGCTTCGAAAAGAATCAAAACTCTCTTTTCCGAGTATGAAAATAGCAAGCAAGAAGTGTTCTGTCGCTTACATGGATAAGGGAGGTGAAGATACTTCTACAGGATAA 3168 0.3974 MDENLFHEQKVPAGCITGIKFDLLSEADLDKISTLEITTAGQVNCSDLGLPNPSQECSTCGTKDRNCCEGHNGVIKFPISIPHPYFLSEIAQLLNKICPACKSIRWTKGAQLILGTKRYYGCKYCSGNTYPTMKFRVSSNDLFRRTAIIVEINERSSKAKKILGQRLPADYWDFIPPDAQQEESCIKSNRRVLSPSQVHYLLNDVDPNFVKKFVPRVDLLRLNCFPVTPNCHRVTEVMHVCSNANRLSFDDRTRACKKLVDFRGTSNELISRVLDCLRISKLNPDKTPSDIFADIRQRKNAENACNSSGSRWMKDVVLGKRNDSSFRTVVVGDPDLDLDEIGIPCQIAESLLVSECVNKQNWEKLLDCCEVRMIEKGQIKVSRKGSRIILYKKEDLQIGDMFYRPLVDGDKVLINRPPSIHQHSMISLSVKVLPISSAVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDKQLINGQSGRNLLSLSQDSLTAAHLLMEDGILLNVYQMQQLQMFCPHNLVLPAIVKAPSSDTSIWTGKQVLSMLFPSNFDYSFHSNGVLVRNGELVSSSEVSGWLRDSECNVFQSFVEQFQGKTLDFLYAAQKVLCEWLSMTGFTVSLADLYLASDPYARKNMMEEISYGLQEAEQACNYKQLLVDYYHDFLAGNVEGNENAMTDVVRLNYERQVCAALSQGSVDAFRQVFRNIQSLADRYGSKGNSFLAMIKAGSKGNLLKLVQHSMCLGLQHSLVRLSYKIPHQLSCAAWNNEKGLDSIQMFSGTSESVQSYIPCAVVEGSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDLIDTYDGTVRNLYGNQIVQFSYDSGEDSSADCRLQETTIGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSKKRSGDQTVSLFLSDKFRNRRYGFEYAAFDVKNYLERMMFSDIVSTVMIIFTPHSNQEKNSPWLCHFHLDREIVQRRNLKVSSIIHSLKKRCDLLRKESKLSFPSMKIASKKCSVAYMDKGGEDTSTG* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1054 1055 Gene3D RNA polymerase Rpb1, domain 3 486 627 IPR042102 -
Dod02g1054 1055 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 4 1047 - -
Dod02g1054 1055 Gene3D - 315 485 - -
Dod02g1054 1055 Gene3D - 628 807 IPR038120 -
Dod02g1054 1055 SMART rpolaneu7 218 506 IPR006592 GO:0003677|GO:0003899|GO:0006351
Dod02g1054 1055 CDD RNAP_IV_RPD1_N 24 854 IPR040403 -
Dod02g1054 1055 Gene3D RNA polymerase II, clamp domain 7 114 IPR044893 -
Dod02g1054 1055 Pfam RNA polymerase Rpb1, domain 4 712 755 IPR007083 GO:0003677|GO:0003899|GO:0006351
Dod02g1054 1055 Gene3D RNA polymerase ii 352 404 - -
Dod02g1054 1055 Pfam RNA polymerase Rpb1, domain 3 482 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Dod02g1054 1055 Pfam RNA polymerase Rpb1, domain 2 319 476 IPR000722 GO:0003677|GO:0003899|GO:0006351
Dod02g1054 1055 PANTHER DNA-DIRECTED RNA POLYMERASE 4 1047 IPR045867 GO:0003899|GO:0006351
Dod02g1054 1055 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 16 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1054 Dod-Chr2 13162178 13170349 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1054 K16250 - gmx:100796185 1568.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g1054 02 13162178 13170349 Dod02g1054 02 13162178 13170349 ECH