Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0896 ATGGACGCACAACAGAGCAATCTATTCGAGACCGCTTCGCAACCCGACACGGGCAACGACGCGTACACCTTCCTCGAATTCAACACTCAGGGTGAGGATTTCGACTACCCGGAGTTTCGCGACCCGATTAGGTCCTCCGTGGCGTGGCCCACGCCCTCTGATTCGCTCGCTGACACGTCGGAGCGCAGTGGAGTAGGCGGCGGTGGTGGTGGCGGAGGAGGAGCTGGGTCCGATCACCAGTCTGATGCCTCTCCGGTTTCGGCGACGGCTGCAAAGGGGGGCCGGTCGGGGAGCAGCAGCGGCGGGAACAGCAGCCAGATGGTGGATGCATTGGCAGCGGGAATGAGTGGGCTGAATTTCGAGGACACGGGGGATGATGACAGTTACGAGTATGGTAAAGGAGATTTCACAGAGCATGCTTGCAGGTATTGTGGGGTGTCCAATCCAGCGTGTGTTGTGAGGTGCAATGTGCCGTCGTGTAGGAAATGGTTCTGCAATTCGCGTGGGAACACCTCTGGATCGCATATCGTGAACCACCTGGTACGGGCAAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCATTGGGGGAAACAATTCTTGAATGCTACAACTGTGGTTGTCGCAATGTGTTTCTCCTTGGATTTATTTCTGCTAAGACTGAAAGTGTAGTTGTTCTTCTTTGTCGTGAGCCTTGCTTGAGTGTCAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGATGCTTCCTGCAGTGGCTTGTCAAGGTGCCATCTGAACAGGAGCAGTTAAGGGCACGCCAAATAAGTGCACAGCAGATAAATAAAGTGGAAGAGTTGTGGAAGACAAATCCAGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGCCAGTGGCTTTGAAATACGAAGATGCATACCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTGACAATTCGATGGGATATTGGTCTTAACAAGAAGCGTGTTGCTTACTTCGTGTTTCCAAAGGAAGACAATGAGTTACGGCTTGTACCTGGTGATGAATTACGTTTGCGTTATTCTGGTGATGCTGCACATTCTGCCTGGCAGTCAGTGGGTCATGTGATCAAGTTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATTTAAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGACAGGATGCAGGGAGCTATGAAGACATTTGCTGTGGATGAGACAAGTGTAAGCGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCTGGGCTTCCAGAGCTCAATGCATCTCAAGTTTTTGCAGTTAAAAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGTCCCCCGGGAACTGGCAAGACTGTAACTTCTGCAGCGCTTGTATATCACATGGCCAAACAAGGTCAAGGGCAGGTTTTGGTTTGTGCACCTAGTAATGTTGCTGTGGACCAGCTGGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGCGGCTTTGTGCAAAGTCAAGGGAAGCTGTAAGTTCTCCTGTCGAGCATTTAACGCTTCATTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAACAAGGAGAACTTTCGAGCAGTGATGAGAAAAAATACAAAGCACTGAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGCGTTGGTGCTGGGGATCCTCGGCTGGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACGGAACCTGAGTGCCTCATTCCTTTGGTTCTCGGTGCGAAGCAGGTTGTTCTTGTTGGTGATCACTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGGCTAGCGCAGTCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGGTTACAGGTTCAGTACCGTATGCATCCGTGCCTCTCAGAATTTCCTTCAAACAGCTTCTATGAAGGCACCCTGCAAAATGGAGTCACTATTAATGAAAGGCAATCACCAGGAATTGATTTTCCATGGCCTGTTCCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTGGAGAAGATTGTCACCACTTTCCTAAAAAGCGGCGTGGTCCCAACTCAGATTGGTGTGATAACACCTTATGAGGGGCAGAGAGCTTATATTGTAAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAACTTTACAAGGAAATCGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATAATTCTATCATGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCTTGAATGATCCTAGAAGGCTCAATGTTGCTTTGACAAGAGCAAGATATGGTATTGTTATTCTGGGGAACCCTAAAGTTCTGAGCAAACAGCCTCTATGGAATAGTTTATTGACACACTACAAGGAACATGAATGCTTAGTTGAAGGGCCTCTGAATAACTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAAAAGATTTACAATGAAAGAAGGCTATTTTATGGGGGTGGACCTGGAATTGCAGCTAATGATACTTTTGGTTCTGTTGGTGCTGGCACTACTTCAGACCGAAGGAGCAGCCGTGGAAGGGGATCTTATATGCCTTCTGGCCCACCAAATGGAACCCAGAAGCCTGGAGTGCATCCTGCCGGGTATCCTATTCCTAGGGTTCCCATGCCTCCTTTTCATGGTGGTCCCCAATCTCAACCGTATGCTATTCCTTCTCGTGGAGCTGTTCATGGGCCTGTTGGGGCAGTTCCTCATGCACCATCTCCAGGGAGTCGGGGTTTTGGGGCTGGGAGAGGTAATTCTGGTGCTCCAGTCGGCAATCTTCCACACCAACAAGGCACACAACAGTCTATCGGGAATCTTGGATCTACATATAATTTCCCTGCTCTGGAGAATACCAACAGCCAGCCATCTGTTGGTGGTCCATTATCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGGGCAGGTCAATCTTTTCGAGATCAATTTTCAGTGCCTGGAATGTCCCAGGACTTCTTGGGTGATGACTTCAAAAGCCAAGGATCACATGTTCCTTATAATGTTGCTGACTTTGCTGCACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCGGGGAACTTTCTAAACCAGAATTCTCAAGCTGGATATTCACGTTTTGGTTCTGGAAATGAATTTATGTCTCAGGACTACATGGCCCATGGATCGCAAGGTCTTTTCACACAGGCTGGATTCGGTGATCCCTTGCAAGATGACGCAACACACAGCCATTTTGGTGTGGCCAATGCCAATCCTCTCCAATCTCAGATGAATTCTCTATACTCCCAGCCTTTTGCTCACTACAACACACAGCCGCTTAACTTGCAGGCTTCCCAACAGCAGTCCTCAGGGTCAGAGCTCCAAAAATCAGAAAATTCAGTATAG 3807 0.4702 MDAQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSSVAWPTPSDSLADTSERSGVGGGGGGGGGAGSDHQSDASPVSATAAKGGRSGSSSGGNSSQMVDALAAGMSGLNFEDTGDDDSYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHSAWQSVGHVIKLTAQEEVALELRASQGVPVDLNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPTQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDTFGSVGAGTTSDRRSSRGRGSYMPSGPPNGTQKPGVHPAGYPIPRVPMPPFHGGPQSQPYAIPSRGAVHGPVGAVPHAPSPGSRGFGAGRGNSGAPVGNLPHQQGTQQSIGNLGSTYNFPALENTNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFAAQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNEFMSQDYMAHGSQGLFTQAGFGDPLQDDATHSHFGVANANPLQSQMNSLYSQPFAHYNTQPLNLQASQQQSSGSELQKSENSV* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0896 1268 MobiDBLite consensus disorder prediction 958 1093 - -
Dod02g0896 1268 CDD DEXXQc_UPF1 489 724 - -
Dod02g0896 1268 Pfam RNA helicase UPF1, 1B domain 344 433 IPR040812 -
Dod02g0896 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 498 630 IPR014001 -
Dod02g0896 1268 MobiDBLite consensus disorder prediction 80 106 - -
Dod02g0896 1268 Gene3D - 724 935 IPR027417 -
Dod02g0896 1268 MobiDBLite consensus disorder prediction 1 106 - -
Dod02g0896 1268 MobiDBLite consensus disorder prediction 998 1014 - -
Dod02g0896 1268 Pfam AAA domain 589 692 IPR041677 GO:0004386
Dod02g0896 1268 Gene3D - 575 627 - -
Dod02g0896 1268 CDD 1B_UPF1-like 345 432 IPR040812 -
Dod02g0896 1268 MobiDBLite consensus disorder prediction 961 976 - -
Dod02g0896 1268 Pfam RNA helicase (UPF2 interacting domain) 139 292 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Dod02g0896 1268 Gene3D - 453 723 IPR027417 -
Dod02g0896 1268 MobiDBLite consensus disorder prediction 1055 1093 - -
Dod02g0896 1268 Gene3D - 345 433 - -
Dod02g0896 1268 Pfam Type III restriction enzyme, res subunit 495 557 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dod02g0896 1268 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 115 1020 - -
Dod02g0896 1268 Pfam AAA domain 702 897 IPR041679 -
Dod02g0896 1268 PANTHER DNA2/NAM7 HELICASE FAMILY 115 1020 IPR045055 -
Dod02g0896 1268 MobiDBLite consensus disorder prediction 1 26 - -
Dod02g0896 1268 CDD SF1_C_Upf1 725 914 IPR041679 -
Dod02g0896 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 948 IPR027417 -
Dod02g0896 1268 CDD ZBD_UPF1-like 140 262 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0896 Dod-Chr2 11419950 11433330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0896 K14326 - gmx:100795594 2404.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0896 02 11419950 11433330 Dod02g0896 02 11419950 11433330 ECH