Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0894 ATGGCGCCTGCAGTGTCGGCTCTCGCAAAGTACAAGCTGGTGTTCTTGGGTGATCAGTCCGTTGGCAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACTTATCAGGCTACAATTGGTATTGATTTTCTATCCAAAACTATGTATCTTGAAGACCGAACTGTTCGGCTGCAGTTGTGGGATACGGCTGGACAGGAAAGATTTAGAAGTCTCATTCCCAGCTACATTAGGGACTCATCTGTTGCTGTCATTGTTTATGATGTTGCAAGCCGCCAGACTTTCCTAAACACATCAAAGTGGATCGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTGGATAAGAGGCAAGTCTCTACAGAGGAAGGGGAAGCTAAGTCGCGCGAGCTAAATGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGGTTTAATATAAAGGCTCTCTTCCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCCACAAAACAAGAAGATCTGGTTGATGTGAACCTAAAATCTTCTGGTGGCAATGAATCTCAATCTCAGTCTGGTGGATGTTCTTGCTGA 624 0.4407 MAPAVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSGGNESQSQSGGCSC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0894 207 SMART ras_sub_4 8 174 - -
Dod02g0894 207 PANTHER GTP-BINDING PROTEIN RAB6 4 207 - -
Dod02g0894 207 TIGRFAM small_GTP: small GTP-binding protein domain 10 167 IPR005225 GO:0005525
Dod02g0894 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 181 IPR027417 -
Dod02g0894 207 PRINTS Transforming protein P21 ras signature 34 50 - -
Dod02g0894 207 PRINTS Transforming protein P21 ras signature 114 127 - -
Dod02g0894 207 PRINTS Transforming protein P21 ras signature 11 32 - -
Dod02g0894 207 PRINTS Transforming protein P21 ras signature 149 171 - -
Dod02g0894 207 PRINTS Transforming protein P21 ras signature 52 74 - -
Dod02g0894 207 ProSiteProfiles small GTPase Ras family profile. 6 207 IPR001806 GO:0003924|GO:0005525
Dod02g0894 207 SMART rho_sub_3 13 173 IPR001806 GO:0003924|GO:0005525
Dod02g0894 207 ProSiteProfiles small GTPase Rab1 family profile. 6 207 - -
Dod02g0894 207 SMART rab_sub_5 11 174 - -
Dod02g0894 207 Pfam Ras family 12 170 IPR001806 GO:0003924|GO:0005525
Dod02g0894 207 PANTHER DRAB5-RELATED 4 207 - -
Dod02g0894 207 Gene3D - 7 203 IPR027417 -
Dod02g0894 207 CDD Rab6 11 171 - -
Dod02g0894 207 ProSiteProfiles small GTPase Rho family profile. 4 177 - -
Dod02g0894 207 SMART ran_sub_2 16 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0894 Dod-Chr2 11403630 11407659 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0894 K07893 - gmx:100790511 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0894 02 11403630 11407659 Dod02g0894 02 11403630 11407659 ECH