Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0891 ATGGCTGCCACCAGCCAAGCACGAGACCTCCTTCACAAATCCTCCCAACACCGCCACCTTCACGCCCCCGTTGTTCTTTGGACTTCCTTGCTTACCAGGTACTCGCGCGACGGTTACGTCCACGAAGCTCGAACGCTGTTCGATATAATGCCTCACAGAAACATAGTCACTTACAATGCCATGTTGTCGGGGTACCTGCAATCCGGGATGCTCGGCGAGGCATCCCGGTTCTTCGAGGGGATGCCGGATAGGAACGTTGTTTCCTGGACCGCCATGCTTGGCGGGATGGCAGATGCGGGGAGGATCGAAGATGCGAGGAAGGTGTTTGCCGAAATGCCGGAGAAGAATGTTGTTTCGTGGAATTCAATGGTGGCAGGATTGGTGAGGAACGGGGAGTTGGAGGAAGCGAGGATGGTTTTCGAGCAGGCGCCGGAGAAGAACGTGGCGTCTTGGAATGGTATGATTTCTGGTTATGTTGAAAATGGTAGAATGGAGGAAGCAAGGGTCTTGTTTGAGGAGATGGGGTGTAGCAGGAATGTGGTTACTTGGACTAGCATGATATCTGGTTATTGTAGGGCAGGAAATGTGGAAGGGGCTTACAGTTTGTTCCGGAGCATGCCGGAGAAAAACGTAATTTCTTGGACAGCCATGATTGGTGGATTCGCCTGGAATGGCTTGTATGAAGAGGCATTGTTGCTTTTTCTTGAGATGAGACTTTCTCATGCAAAACCGAATGGGGAGACCTTTATTTCTCTTGCCTATGCATGTGCAGGCTCGGGTTTTCCTTCACTTGGCAAGCAGTTACATGCTCCTCTAATTGTTAATGGCTGGAAGCTTGATGATTATGATGGCAGGTTATGCAGAAGTCTTGTTCGAATGTACTCTGAGTTTGGTCATATGGACTCTGCGCACAATCTATTTGAAGGTGATCTGAATAACTGTGATGATCAGTCTTTCAACTCTATGATAAATGGTTATATTCAGATCGGTCAGTTAGAAAAGGCAGAAGATTTGTTTGAAAGAGTACCCATTAGAAACAGAATTGCATGTACTTGCATGATTGCTGGTTTTCTTAGTGCTGGGCAAGTAATAAAGGCATGCGATCTCTTTAATAACATGCCTGACAAGGATTCAATGGCATGGACTTCAATGATTTATGGGTATGTTCAAAATGAGCTAATTGCTGAAGCCATCAGCTTGTTTTCTGAAATGATGGCTCACTGGTGTCATGCCTATAAATTGTACATTTGCTGTTCTTTTTGGTGCCATTGGATCAGTCGCAAATCTTGA 1290 0.4651 MAATSQARDLLHKSSQHRHLHAPVVLWTSLLTRYSRDGYVHEARTLFDIMPHRNIVTYNAMLSGYLQSGMLGEASRFFEGMPDRNVVSWTAMLGGMADAGRIEDARKVFAEMPEKNVVSWNSMVAGLVRNGELEEARMVFEQAPEKNVASWNGMISGYVENGRMEEARVLFEEMGCSRNVVTWTSMISGYCRAGNVEGAYSLFRSMPEKNVISWTAMIGGFAWNGLYEEALLLFLEMRLSHAKPNGETFISLAYACAGSGFPSLGKQLHAPLIVNGWKLDDYDGRLCRSLVRMYSEFGHMDSAHNLFEGDLNNCDDQSFNSMINGYIQIGQLEKAEDLFERVPIRNRIACTCMIAGFLSAGQVIKACDLFNNMPDKDSMAWTSMIYGYVQNELIAEAISLFSEMMAHWCHAYKLYICCSFWCHWISRKS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0891 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Dod02g0891 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Dod02g0891 429 PANTHER OS01G0913400 PROTEIN-RELATED 344 410 - -
Dod02g0891 429 Gene3D Tetratricopeptide repeat domain 2 114 IPR011990 GO:0005515
Dod02g0891 429 Gene3D Tetratricopeptide repeat domain 115 174 IPR011990 GO:0005515
Dod02g0891 429 Gene3D Tetratricopeptide repeat domain 175 278 IPR011990 GO:0005515
Dod02g0891 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Dod02g0891 429 SUPERFAMILY TPR-like 26 172 IPR011990 GO:0005515
Dod02g0891 429 PANTHER OS01G0913400 PROTEIN-RELATED 55 246 - -
Dod02g0891 429 PANTHER OS01G0913400 PROTEIN-RELATED 22 57 - -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 181 211 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 87 118 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 118 147 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 56 87 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 380 409 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 318 341 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Dod02g0891 429 TIGRFAM PPR: pentatricopeptide repeat domain 349 376 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 175 206 IPR002885 -
Dod02g0891 429 Pfam PPR repeat family 209 256 IPR002885 -
Dod02g0891 429 Pfam PPR repeat family 53 86 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 87 117 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 349 376 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 380 406 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 150 174 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 318 341 IPR002885 -
Dod02g0891 429 Pfam PPR repeat 118 147 IPR002885 -
Dod02g0891 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 54 88 IPR002885 -
Dod02g0891 429 PANTHER OS01G0913400 PROTEIN-RELATED 264 343 - -
Dod02g0891 429 PANTHER - 264 343 - -
Dod02g0891 429 PANTHER - 344 410 - -
Dod02g0891 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Dod02g0891 429 PANTHER - 55 246 - -
Dod02g0891 429 PANTHER - 22 57 - -
Dod02g0891 429 Gene3D Tetratricopeptide repeat domain 279 344 IPR011990 GO:0005515
Dod02g0891 429 Gene3D Tetratricopeptide repeat domain 345 419 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0891 Dod-Chr2 11388625 11389914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0891 25 405 Glycoside Hydrolase AT3G49170 24.158 3.65e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0891 - - gmx:102662400 617.846