LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g0624	ATGATGCATTTGAGGCACTTGTTCTTCTGCAAGGCTAACCTCATTAACAGGTTAACCCTGCAAGTGCAAGCACGTTCCTATGCCCGCCACCCGTTTCCCAACAGAGTCTCTCACTACCTCTACCGTGCCAAGCTCATTGACTCCATTCGACTCTCTCTTCGCTCCAACAACCCCAACTCACTCCCCACTCTCTTGAACGATCGTCTCCTTGACTCCTTTGTGGTCACTCAGGCCCTGCGTTCTGCTCCTTCTGCAGATTCTGCACTCTCCCTTGTGCATGCCCTCGAGAAAACTCCACGTTTTTCGCATACTCAGCACACCCTCCATGCCCTTGCCACTGTGCTTGCCCAGTCTGGTCGAGGCTCCCAGCTAAAATCCCTCATTGATGCTATCCGTGCCAAACAGTTTGGCAATATTAGGATCAGCTTCATGAATCTCATGCAGTGGCATGCTTTGGCTGGTGACCTTGACTCTGTTCTTGGTGTTTGGGATGAGTATAGGCTTGCCGATGACCGTGTCTGCACTGAGTCTTATAACATTGTCATGGCTCTTTGTGCGCGAATGGGCAAGGACTCTGAGGTTGTAAGAGGTTTTTACAGGATGATTGATGAAGGGTCACTTCCGAATTGCAGAAGCTATACCATAATAATTGAGCACCTTGTGAAATGTGGTAAAGTATTGGAAGCCTTGGAGGTATTTAAGGTTCTGCCTTCAATGAGGATCAAGCGAACTTTGAAACAGTACTCCATTCTGGTTGATAGTTTCACTGCCAGCAAACGGTTTGATGAAGTGAAAACCTTGCTTGATGAAATGCAAGTTGATGGAGTGTTGCCTAGTCGAGCCATGTGTTTGTCGCTGCGGAAGATGCAGGAGGAAGGATTTCTTGATGAGACTGACCTAGTATTCAGGGAAACTTTGTTAGATGAAAGAATCAAGAATGTAAGATATTCTGTTGAAAGCAGTGATTATGATGATGAGGAGGATAAGGATGAAAATGTAGGTGATACTTGTCAATGTGATCATGTTCATGGGGTCCAGTTAAAACCATGGATGGACCCACGGGCTTTGGCTAGTGCCTTAAAGAATTGGAGTCCTGATGAGGTGTCGGCACTAGAGGGTGCAAACTTTGTGTGGACAACCAGGTTGGTCTGCAAGGTACTTAGAAATTTCAAATCACCAGAAACTGCATGGAATTTCTTCTGTTGGGTTTCTAATCAACCTGGATTTACACATGATATATACACAGTACAAAGAATCATTACCCTTTTAGCACGCCATGGACGAACTGAATTGGTTGATAGACTCTTATCCAAAATCAGAAATGAGGGAATGAGACTGCCATTCAGCACCATCAGGCTAATCATCGACTTTTATGGGATTTCAAAAAGTGCTGATGCTGCTCTGAAGATTTTCAATGATGATCGCATACTTTGTGGTCCCATATCAAAATTTAATCTGATGCTTTTGTATTCTTCTCTTTTAAGAACACTAACCAAGTGTGGAAGGAATTCTGATGCCCTGGATATATTTGATGAGATGATTTTAAATGACATTTGCCCAGATATACAGACATTTTCGGGTCTAATGCACTATTTCTCACAACTTGGAGATATAAAAACAGTGCAGAAACTCTTTACAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTCATCTTTATAAGGTACTTATCCAAGGTTATTGCAAATCGAAAAGAGCTGCTCTAGCATGGAGGCTATTTGAAGATATGAAGAATTCTGGGCTGGTGCCTGATTCTCCCACCAAAGAATTGCTAGTGAAGAGCCTCTGGGGAGAAGGGAGACGGAGAGAGGCTGCAGCTGTGGAAGAGAGTTGTGAAGAAATAAAAGCCCTTCCACGTCCATTGCGTGGTCATGTATGGACTGTCAGCTCTGCTGATCTAACAAAAGTTTATAATCTTTTTTCAGATTGTTTTGCTTCCAATGGTGGTTAG	1971	0.4394	MMHLRHLFFCKANLINRLTLQVQARSYARHPFPNRVSHYLYRAKLIDSIRLSLRSNNPNSLPTLLNDRLLDSFVVTQALRSAPSADSALSLVHALEKTPRFSHTQHTLHALATVLAQSGRGSQLKSLIDAIRAKQFGNIRISFMNLMQWHALAGDLDSVLGVWDEYRLADDRVCTESYNIVMALCARMGKDSEVVRGFYRMIDEGSLPNCRSYTIIIEHLVKCGKVLEALEVFKVLPSMRIKRTLKQYSILVDSFTASKRFDEVKTLLDEMQVDGVLPSRAMCLSLRKMQEEGFLDETDLVFRETLLDERIKNVRYSVESSDYDDEEDKDENVGDTCQCDHVHGVQLKPWMDPRALASALKNWSPDEVSALEGANFVWTTRLVCKVLRNFKSPETAWNFFCWVSNQPGFTHDIYTVQRIITLLARHGRTELVDRLLSKIRNEGMRLPFSTIRLIIDFYGISKSADAALKIFNDDRILCGPISKFNLMLLYSSLLRTLTKCGRNSDALDIFDEMILNDICPDIQTFSGLMHYFSQLGDIKTVQKLFTMVRQSGLEPDAHLYKVLIQGYCKSKRAALAWRLFEDMKNSGLVPDSPTKELLVKSLWGEGRRREAAAVEESCEEIKALPRPLRGHVWTVSSADLTKVYNLFSDCFASNGG*	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g0624	656	Gene3D	Tetratricopeptide repeat domain	368	486	IPR011990	GO:0005515
	Dod02g0624	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	209	243	IPR002885	-
	Dod02g0624	656	PANTHER	OS01G0167750 PROTEIN	8	653	IPR044175	-
	Dod02g0624	656	Pfam	PPR repeat	490	516	IPR002885	-
	Dod02g0624	656	Pfam	PPR repeat	248	276	IPR002885	-
	Dod02g0624	656	Pfam	PPR repeat	212	237	IPR002885	-
	Dod02g0624	656	Pfam	PPR repeat	177	205	IPR002885	-
	Dod02g0624	656	Gene3D	Tetratricopeptide repeat domain	487	654	IPR011990	GO:0005515
	Dod02g0624	656	Gene3D	Tetratricopeptide repeat domain	75	343	IPR011990	GO:0005515
	Dod02g0624	656	TIGRFAM	PPR: pentatricopeptide repeat domain	248	279	IPR002885	-
	Dod02g0624	656	TIGRFAM	PPR: pentatricopeptide repeat domain	559	592	IPR002885	-
	Dod02g0624	656	TIGRFAM	PPR: pentatricopeptide repeat domain	490	522	IPR002885	-
	Dod02g0624	656	TIGRFAM	PPR: pentatricopeptide repeat domain	212	241	IPR002885	-
	Dod02g0624	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	174	208	IPR002885	-
	Dod02g0624	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	521	555	IPR002885	-
	Dod02g0624	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	556	590	IPR002885	-
	Dod02g0624	656	Pfam	PPR repeat family	555	601	IPR002885	-
	Dod02g0624	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	486	520	IPR002885	-
	Dod02g0624	656	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	244	278	IPR002885	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g0624	177	614	Glycosyltransferase	AT1G05670	21.525	8.14e-15	76.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g0624	-		-	gmx:100779372	945.266

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g0624	02	8032969	8034939	Dod02g0624	02	8032969	8034939	ECH