Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0619 ATGGCAACCGAGAGAATTCTCAAACCTTCCAAGTGGTTCTCCAACAAAAGTCTCCGCATCAGTCTTCATCGCCGAAGATCATCGTCGTCCAACCCATCAAAGTCAAGCTCTTCTCGCTCCCCCCCGGCGTCACCACCGTGTACCACTACTCCGAAGAACACGTATGGCACCAGAGAAGAAGAGCTCAGGGAGGTTTTCCGTCACTTTGATGGAAACGGAGATGGGAAAATCTCAGCCCTTGAATTGAGATCATATTTTGGTTCCGTTGGAGAGTATTTGTCACATGAGCAGGCTCAAGGATTGATCCAAGACCTCGATTCCGATGGTGACGACTTGTTGGATTTCCAAGATTTCACGAAGCTGATGAAGAGCGGTGAAGATCATAATGGGATTAACCGTGGTGATGATGACGAGGATGATCTGAGGAAGGCTTTTGAGATGTTTGTGTGGGAAAAGGGTTCTGGCTGTATTACCCCAAAAGGGTTGCAGAGGATGCTGCACCGCCTTGGAGATGAAAAATCTTATGATGAGTGTGTGGCCATGATCGGTGCCTTTGATGTAGATCACAACGGTGTCCTTGATTACAACGAGTTTCACCAAATGATGATGGCCTAG 615 0.478 MATERILKPSKWFSNKSLRISLHRRRSSSSNPSKSSSSRSPPASPPCTTTPKNTYGTREEELREVFRHFDGNGDGKISALELRSYFGSVGEYLSHEQAQGLIQDLDSDGDDLLDFQDFTKLMKSGEDHNGINRGDDDEDDLRKAFEMFVWEKGSGCITPKGLQRMLHRLGDEKSYDECVAMIGAFDVDHNGVLDYNEFHQMMMA* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0619 204 ProSitePatterns EF-hand calcium-binding domain. 106 118 IPR018247 -
Dod02g0619 204 MobiDBLite consensus disorder prediction 24 55 - -
Dod02g0619 204 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 17 203 - -
Dod02g0619 204 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Dod02g0619 204 Pfam EF-hand domain pair 59 123 IPR002048 GO:0005509
Dod02g0619 204 ProSiteProfiles EF-hand calcium-binding domain profile. 93 128 IPR002048 GO:0005509
Dod02g0619 204 PANTHER CALCIUM BINDING PROTEIN 17 203 - -
Dod02g0619 204 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Dod02g0619 204 ProSiteProfiles EF-hand calcium-binding domain profile. 173 204 IPR002048 GO:0005509
Dod02g0619 204 MobiDBLite consensus disorder prediction 22 57 - -
Dod02g0619 204 CDD EFh 140 203 IPR002048 GO:0005509
Dod02g0619 204 SMART efh_1 61 89 IPR002048 GO:0005509
Dod02g0619 204 SMART efh_1 177 204 IPR002048 GO:0005509
Dod02g0619 204 SMART efh_1 97 125 IPR002048 GO:0005509
Dod02g0619 204 SUPERFAMILY EF-hand 56 203 IPR011992 -
Dod02g0619 204 CDD EFh 61 103 IPR002048 GO:0005509
Dod02g0619 204 Gene3D - 131 204 - -
Dod02g0619 204 Gene3D - 48 130 - -
Dod02g0619 204 Pfam EF-hand domain pair 154 202 IPR002048 GO:0005509
Dod02g0619 204 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0619 Dod-Chr2 7976245 7977063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0619 1 204 EF-hand Containing Proteins AT3G50770 52.133 1.05e-63 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0619 K13448 - gmx:100306370 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0619 02 7976245 7977063 Dod02g0619 02 7976245 7977063 ECH