Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0569 ATGGTGCACAGCGCCTACGACTGCGTGGAGCTGGTGCCCGATTGCCCCTCCAAGATCGAAGCCGTCGAATCGTACGGCTCCAAGCTCCTCCTCGGTTGCTCCGATGGATCTCTCCGCATCTACGCTCCCCAATCCCAATCGCAATCGCAGTCGCACTCGCTTCACAACGAACCTTACGCGCTCGAGAAGAACCTCACGGGCTTCGCGAGGAAGCCTCTCGTATCCATGGAGGTGCTCGAGTCCAGGGAGCTCCTCCTGTGTCTCTCCGAATCCATCTCCTTCCACAGGCTCCCTTCCTTCGAGACCATCGCCGTCATCACCAAGGCCAAGGGCGCCAACGCCTTCTCCTGGGACGACCGCCGCGGCTTCCTCTGCTTCGCCCGCCAGAAGCGCGTCTGCATCTTCCGACACGACGGTGGAAGGGGATTCGTGGAGGTTAAGGATTTCGGTGTTCCGGACGTGGTGAAGTCCATGTGCTGGTGCGGCGAGAACATCTGTTTGGGGATTCGAAGAGAGTACGTCATTCTCAACGCTACGAGTGGTGCTTTGTCTGAGGTGTTCACTTCTGGGAGACTTGCTCCGCCTCTAGTTGTTTCTCTCCCTTCCGGAGAGCTTCTTCTCGGAAAGGAGAATATTGGGGTGTTTGTGGACCAAAATGGGAAGCTTCGTCCGGAAGGTAGGATTTGTTGGTCAGAGCCACCAACTGAGGTTGTAATTCAGAAGCCATATGCTGTGGCTTTGCTGCCAAGATTTGTGGAGATTCGATCTCTCCGAGCTCCGCATCCGCTGATTCAAACTGTTGTTCTTCGGAATGTTCGCCATGTTTGCGAAAGCAGCAATAATTCCGTGATAATTGCTTTGGATAATTCTATTCATGGCCTCTTCCCTGTTCCTATTGGAGCTCAGATTGTCCAATTAACAGCATCTGGCAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTCCTTCCACCTGAAGATTCAAGTCTGCGTGCTGCAAAGGAGGGGTCTATTCATATTAGATATGCTCACTACCTTTTTGATAATGGGAGCTACGAGGAGGCAATGGAACATTTTCTGGCATCTCAAGTAGACATAACCTATGTGCTTTCTATGTATCCGTCCATTATCCTTCCAAAGACAACTATTGTTCATGAACCAGAGAAGTTAGACATTTATGGGGATGCTTCATATCTCTCCAGAGGTTCTTCGGGTGTGTCAGATGATATGGAGTCTCCACCAACATTTCATATGTCGGAATCTGAAGAGAATGCAGCACTTGAATCCAAAAAAATTAGCCATAATATGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATTTAGTTTTATTGAGAAGGCTACTGCAGAGGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCCTACAATAGGTTTAAGAAAACAAACAAGGGGCGTGGTAGTATACCCATTAGTTCAGGAGCTCGTGAGATGGCTTCAATATTGGACACTGCTCTACTCCAAGCATTACTTCTCACTGGACAATCATCTGCTGCTTTAGAATTGTTGAGAGGTCTTAACTACTGTGATTTGAAAATATGTGAAGAAATACTTCAAAAAGGCAACCATCATGCTGCTTTGTTAGAACTTTACAAGTGCAACTCAATGCATCGGGAAGCTCTTGAACTACTTCACAAATTGGTGGAAGAGTCAAAGTCTAGCCAGTCTGAAATTACCGCTAGGTTTAAGCCCGAGGACATTGTTGAGTATCTCAAGCCACTATGTGTGTCAGACCCCATACTTGTTCTAGAGTTCTCGATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTGTCTGGAAATATTCCAGCAGACATGGTGAACTCGTATTTGAAGCAGCATTCTCCCAACATGCAAGCTACTTATTTGGAGCTTATGCTTGCTATGAATGAGAATGCCATATCTGGCAATTTGCAAAATGAAATGGTAAACATCTATCTCTCTGAGGTGCTTGATTGGTATGCTGATTTAAGTGCTCAACAGAAATGGGACGAGAAAGTTTATTCCCCGACAAGGAAAAAATTGTTGTCTGCTTTAGAGGGCATATCAGGTTACAATCCAGAGGCTTTGCTGAAACGTCTTCCACCAGATGCGCTATATGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAGCATGAACTGGCATTATCATTGTATGTTCACAAGCTAGGTGTTCCAGATATGGCATTGTCTTATTGTGATCGGCTGTATGAGTCTATGCACCAGCCATCAGTAAAATATCCCAACATATACCTTACGCTTCTGCAAATCTATTTGAATCCTCGGAGGACAACTGCAAGCTTTGAAAACAAAATTACAAATCTGTTATCCCCGCAGAATCCAACCATTCCAAAAGTTGGTTCGGCGACATCAATAAAATCTAAAGGAGGCCGAGGGAGCAAGAAAATTGCTGCAATAGAGGGTGCAGAGGACACAAAATTTAGTTTGAGCGGCACTGATAGTAGCAGGAGTGATGGTGATGGTGATGTGGATGAATTTAGCGAGGGTGGTTCTACTATCATGCTTGATAAGGTCCTTGATTTGTTGAGCCGCAGATGGGATAGAATAAATGGAGCTCATGCCCTTAAACTTTTACCAAGAGAGACTAAATTACAGGACTTGCTTTCATTTCTTGGACCACTTCTGAGAAAATCTAGTGAAATGCGCCGTAATTGCTCAGTGATCAGGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTATATAGTCAGAGGAAGGCAGTTGTGAAGATAACCAGTGAGAGCATGTGCTCTTTGTGCCATAAGAAGATAGGGACCAGTGTTTTCGCAGTCTACCCTAATGGGAGCACTCTCGTGCACTTTGTTTGTTTCAGAGATTCTCAAAATATGAAAGCTGTAACCAGAGGGTCTCAATTGAGGAAGCGATTATGA 2988 0.4548 MVHSAYDCVELVPDCPSKIEAVESYGSKLLLGCSDGSLRIYAPQSQSQSQSHSLHNEPYALEKNLTGFARKPLVSMEVLESRELLLCLSESISFHRLPSFETIAVITKAKGANAFSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDVVKSMCWCGENICLGIRREYVILNATSGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLRPEGRICWSEPPTEVVIQKPYAVALLPRFVEIRSLRAPHPLIQTVVLRNVRHVCESSNNSVIIALDNSIHGLFPVPIGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQVDITYVLSMYPSIILPKTTIVHEPEKLDIYGDASYLSRGSSGVSDDMESPPTFHMSESEENAALESKKISHNMLMALIKYLQKKRFSFIEKATAEGTEEVVLDAVGDNFASYNRFKKTNKGRGSIPISSGAREMASILDTALLQALLLTGQSSAALELLRGLNYCDLKICEEILQKGNHHAALLELYKCNSMHREALELLHKLVEESKSSQSEITARFKPEDIVEYLKPLCVSDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQATYLELMLAMNENAISGNLQNEMVNIYLSEVLDWYADLSAQQKWDEKVYSPTRKKLLSALEGISGYNPEALLKRLPPDALYEERAILLGKMNQHELALSLYVHKLGVPDMALSYCDRLYESMHQPSVKYPNIYLTLLQIYLNPRRTTASFENKITNLLSPQNPTIPKVGSATSIKSKGGRGSKKIAAIEGAEDTKFSLSGTDSSRSDGDGDVDEFSEGGSTIMLDKVLDLLSRRWDRINGAHALKLLPRETKLQDLLSFLGPLLRKSSEMRRNCSVIRSLRQSENLQVKDELYSQRKAVVKITSESMCSLCHKKIGTSVFAVYPNGSTLVHFVCFRDSQNMKAVTRGSQLRKRL* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0569 995 Pfam Vacuolar sorting protein 39 domain 1 500 608 IPR019452 -
Dod02g0569 995 ProSiteProfiles Citron homology (CNH) domain profile. 16 282 IPR001180 -
Dod02g0569 995 Pfam Region in Clathrin and VPS 628 758 IPR000547 GO:0006886|GO:0016192
Dod02g0569 995 Pfam Vacuolar sorting protein 39 domain 2 869 977 IPR019453 -
Dod02g0569 995 Pfam CNH domain 26 277 IPR001180 -
Dod02g0569 995 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 603 786 IPR000547 GO:0006886|GO:0016192
Dod02g0569 995 SUPERFAMILY WD40 repeat-like 14 205 IPR036322 GO:0005515
Dod02g0569 995 PANTHER CNH DOMAIN CONTAINING 1 994 IPR032914 GO:0016192
Dod02g0569 995 PANTHER VACUOLAR SORTING PROTEIN 39 1 994 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0569 K20183 - gmx:100805342 1657.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0569 02 7413691 7425980 Dod02g0569 02 7413691 7425980 ECH