Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0420 ATGTCGTCGACGAGGAAGATCACCCTGAAGAGTTCGGACGGAGAGGCTTTCGAAGTGGACGAGGCGGTGGCGCTGGAGTCGCAGACCATCAAGCACATGATCGAGGACGATTGCGCCGACAGCGGCATCCCTCTCCCAAACGTCAGCAGCAAGATCCTCGCGAAGGTGATCGAGTACTGCAAGAAGCACGTCGAGGCCTCCACCGCTGAGGATAAGCCCAACGACGATGATCTCAAGGCATGGGACGCTGATTTCGTCAAGGTTGACCAGGCTACACTCTTCGAACTCATCCTGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTAGCAGACATGATCAAGGGGAAGACTCCAGAGGAAATCCGCAAGACCTTTAACATTAAGAATGACTTCACTCCCGAGGAAGAGGAGGAAGTTCGTCGGGAAAACCAATGGGCGTTTGAATGA 468 0.5385 MSSTRKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVSSKILAKVIEYCKKHVEASTAEDKPNDDDLKAWDADFVKVDQATLFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0420 155 PANTHER SKP1 1 155 IPR016897 GO:0006511
Dod02g0420 155 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Dod02g0420 155 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Dod02g0420 155 CDD BTB_POZ_SKP1 6 120 - -
Dod02g0420 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Dod02g0420 155 Gene3D Potassium Channel Kv1.1; Chain A 1 155 IPR011333 -
Dod02g0420 155 PANTHER PUTATIVE-RELATED 1 155 - -
Dod02g0420 155 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Dod02g0420 155 Pfam Skp1 family, tetramerisation domain 6 64 IPR016073 GO:0006511
Dod02g0420 155 SUPERFAMILY POZ domain 5 65 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0420 Dod-Chr2 5616667 5618526 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0420 K03094 - gmx:100809769 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0420 02 5616667 5618526 Dod02g0420 02 5616667 5618526 ECH
Dod02g0420 02 5616667 5618526 Dod05g0148 05 1888203 1890227 PCT