Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0388 ATGCTTTCGTTACCTGCAATTGCTGGACAAGCTATTGAGCCATTAGCACAATTGATGGAGACTGCTTACATTGGTAGATTGGGAGTGCTGGAGTTGGCATCTGCTGGTGTTTCCATGTCAGTTTTCAACATAGTGTCAAAGGTATTCAACATTCCTCTCCTTAGTGTGGCAACTTCTTTTGTGGCAGAAGAAATTGCGGCACAGAGAATCGATGGATCCACTTCAGGTAGCAGAAATGTGACTGAAATATATAATGAAGTTCCTCATGATATGGCTGAGAGAAAGTTGCTGCCTTCAGTTTCAACTGCATTAATATTAGCAGCAGCAATTGGTATTCTTGAAGCTTTAGCTATGTACTTTGGTTCCGGCCTGTTTCTCAACATGGTGGGAATATCAACAGCCTCACCTATGCGAGTTCCAGCAGAACAGTTTTTATCGCTCAGAGCCATTGGTGCTCCCGCAGTTGTTGTTTCTCTGGCTGTCCAAGGAATATTCCGGGGGTTTAAGGACACCAGGACTCCTGTACTATGTTTAGGCTTAGGCAATTTGGCAGCAGTGTTTTTGTTTCCTCTGCTTATATATAATTTTCGCATGGGTGTGACTGGAGCTGCTCTCTCCACTGTCATTTCCCAGTACATTGTCACAATTTTGATGATCTTGAGTCTCAGTAAGAGGACCAAACTGTCAATTCCCAATATTAAAAGCCTACGCTTTGGTGGATACTTGAGATCTGGCGGTTTCCTTCTTGGGAGAACTTTAGCTGCTGTAGTGACAATAACTTTGAGCACAACAATGGCTGCACGTCTTGGACCTTTAGCCACAGCAGCACATCAGATATGCTTGCAAGTATGGTTGTCAGTATCCCTCCTTGCAGATGCACAAGGAGCAGCTGGTCAGGCTCTTGTTGCAAGTTTCTTGGCAAAGGGTGACTATAATACTGTGAAAGAAGTTACTTACTTCGCTTTAAAGACAGGACTATTCACTGGAGTCATGTTAGCTATTATATTGGGTGCCTCTTTTGGTTCTCTAGCATCCCTTTTCACCAAGGACACTGAGGTCCTAGGCATTGTTAAATCTGGCTTACTGTTTGTGAGTGCTAGCCAGCCTATAACAGCTTTGGCTTATGTCTTTGATGGCCTACATTATGGAGTTTCAGACTTCTCCTTCGCTGCTTGTTCTATGATGCTGGTTGGTGCAATCTCTTCTGCATTTTTGCTTTTGGCTCCTTCTTTTATTGGTCTACCGGGAGTCTGGTATGGTTTAGCTCTTTTCATGGGCCTGCGGACAATTGCAGGAAGTATAAGATTATTATCAGAAAATGGTCCATGGTGGTTCTTGCAACCAGACATCCACAAATTTAAGTTCTGGACCAACCGCATTACAGAAGGGCAAAGGCAAAAGAATGAATCACTTGGCTACTGA 1422 0.436 MLSLPAIAGQAIEPLAQLMETAYIGRLGVLELASAGVSMSVFNIVSKVFNIPLLSVATSFVAEEIAAQRIDGSTSGSRNVTEIYNEVPHDMAERKLLPSVSTALILAAAIGILEALAMYFGSGLFLNMVGISTASPMRVPAEQFLSLRAIGAPAVVVSLAVQGIFRGFKDTRTPVLCLGLGNLAAVFLFPLLIYNFRMGVTGAALSTVISQYIVTILMILSLSKRTKLSIPNIKSLRFGGYLRSGGFLLGRTLAAVVTITLSTTMAARLGPLATAAHQICLQVWLSVSLLADAQGAAGQALVASFLAKGDYNTVKEVTYFALKTGLFTGVMLAIILGASFGSLASLFTKDTEVLGIVKSGLLFVSASQPITALAYVFDGLHYGVSDFSFAACSMMLVGAISSAFLLLAPSFIGLPGVWYGLALFMGLRTIAGSIRLLSENGPWWFLQPDIHKFKFWTNRITEGQRQKNESLGY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0388 473 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 1 450 IPR044644 -
Dod02g0388 473 PANTHER PROTEIN DETOXIFICATION 1 450 - -
Dod02g0388 473 CDD MATE_DinF_like 1 438 IPR044644 -
Dod02g0388 473 Pfam Polysaccharide biosynthesis C-terminal domain 145 245 IPR029303 -
Dod02g0388 473 Pfam MatE 260 394 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Dod02g0388 473 TIGRFAM matE: MATE efflux family protein 5 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0388 Dod-Chr2 5188518 5193511 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0388 K03327 - qsu:112009074 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0388 02 5188518 5193511 Dod02g0388 02 5188518 5193511 ECH