LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g0380	ATGGCGGTTCCCCTCAGAATGAGCGGCAACAACAACGAGCGCGGCCTACTTTCTCGTTTGAAAACCCTCATCAGCACACACGCCCAGAGGTTCCACTCTCCTACTCCGACCAAAGGGTCACTGCAAGATCGGTTGTCCCCTAAAACGGACTCAGACTATTCGGCTGTGAGAGGACACCTTGACCTCTCAAAATGGAAGACTTTGGACGCAAGCAAGCTTGGTATAACTAGTTCTAGGATTTCACAGCCATCTCGGATTGTCCTGAACCATCTTCAGCGCAAAGGATTTAAGTCCTACTTGGTAGGTGGGTGTGTGAGAGATCTTCTATTGAATAGAACTCCAAAAGATTTTGATGTGATCACCACTGCAGAGCTTACAGAGGTGCGAAAGCACTTTCGCAAATTAGGCCGTGCTGTAATTGTTGGACGGCGTTTTCCAGTGTGCCTGGTTCATGTAAAAGGTTCTGTAGTAGAGGTAACCAGTTTTGAGACAGAGGCACGGACTTCCAAAGGGAGTGACCAATTGCGACGAACTCTATTGCCCAAATGCAGTAATAAAGAAGATTTAATTCGTTGCAAAAACTCCTTGCGCAGAGACTTCACAGTTAATAGCTTATTTTATGACCCCTTTGCTAATAAGATCTACGATTATGCCAATGGAATGGCTGATTTGAGGTCCTTGAAGCTAGAAACTGTGATCCCTGCTCAACTGTCCTTTAAAGAGGATCCTGGGAGAATTTTGCGTGGCTTCAGAATTGCTGCTCGTCTAGGTTTATCATTATCAAGGGAGACTGAGGCTGCTATCTTGATTTATTCTTCACTAATTAAGAACTTTGACAAGAGTAAAATAATGATTGAATTGAACTATATGCTGTCTTATGGTGCTGCTGAACCATCTTTGCGCTTGCTCTGGAAATTCAACTTGCTTGAATTTTTACTTCCTGTGCATGCAGCATATCTCGATGAACAAGCCAATGAAGAAGATGATATGGCTTCCAATATGTTGATGAAACTATTCCTCCATCTGGATAATTTGGTTGCATGTGACCGGCCTTCTGACTGTTCTCTATGGCTTGGATTGCTAGCATTTCACCTGGCACTAGTAAATAACCCTCAAGATGCCCTCGTGGTGTGGGCACTTGCTTCTGTTCTATATCATGGGGAGTGGAAAGAAGGGGTTAAATTTGCTAAAGGACATGCGGAAATGCTTGTTAATTTCGCACCTGAAATAAGGAGGTCCAGTTTATACAAATCAGATGAAGAAATTGCAGAAGCAGTCACTAATTTGGCATCTCTCATCATTAAGTCCATTCCTGTTCTCGTTAATAATAACAGTCTTCTTCAATCCATGTCCAGATACCCATCTTTTCCACGCTCTGGCATGGTATTTGTATCAAGCAAAACAGGGAAACATGTATCTGAAATTTTCAAAGTGCTGGCCAATGATGTCCAATCTTATAGGAGTGCAAGAAAAATCTTAAAGATAAATTATGACATGCTTGGGAAGGGCGACCTTACAGAGACTAGATATGTTTTGGGCAAAATTGTTCTTGACACTATGACTAGTGGAATTGTTGAGGACGGGGAGTATTTTGCGGCTGAAAGATGCCATCCTAAGACTGAGGGCACCCAGGAAACTGGCCAGTTGCAACTTTCAGATCCAGTAGACCATCAATCGGTTGCAAGGAAACATAAAAGACAAGTTTCATCACCACCAAATTCAGAACGTAAGCAAGAAAAAGTTAAGAAACTGAAATTGGTTGGCAATGAAAATGTTGCAGAGCAGAAAACCAGTGAAGAGAGCCAGAAGCGAGTTAAATTAAGTCACAAGGTTGATCCATCTATGACGAAGGACTCCATGCTAAAAAAGAAAAAATATCAAAGGAAACAGCTGATTAAGGATTGGAGGAAAACCACCATTCTGAGTAAAACTTCTGCAGGCCAAGCTAGGCAATTGAAGATGGATAAACACAACACACGTACATCATCCCAGTCTACAGTTTCTAAGAATCATCAGGAAGTAGCTGACAATTGCGACATGAATGTCGATGCGAAAACAACAAATAAGTCAGACTTAAAGAAGGAAAAATTACATTTATCACCTGATGAAGACTTGAAGGATAAAGAAAGACGGCAACCACATAAAAGTAAGCTAAGGCAGCCTTCACTCTCCAGTCTCTTCAAGTAA	2187	0.4198	MAVPLRMSGNNNERGLLSRLKTLISTHAQRFHSPTPTKGSLQDRLSPKTDSDYSAVRGHLDLSKWKTLDASKLGITSSRISQPSRIVLNHLQRKGFKSYLVGGCVRDLLLNRTPKDFDVITTAELTEVRKHFRKLGRAVIVGRRFPVCLVHVKGSVVEVTSFETEARTSKGSDQLRRTLLPKCSNKEDLIRCKNSLRRDFTVNSLFYDPFANKIYDYANGMADLRSLKLETVIPAQLSFKEDPGRILRGFRIAARLGLSLSRETEAAILIYSSLIKNFDKSKIMIELNYMLSYGAAEPSLRLLWKFNLLEFLLPVHAAYLDEQANEEDDMASNMLMKLFLHLDNLVACDRPSDCSLWLGLLAFHLALVNNPQDALVVWALASVLYHGEWKEGVKFAKGHAEMLVNFAPEIRRSSLYKSDEEIAEAVTNLASLIIKSIPVLVNNNSLLQSMSRYPSFPRSGMVFVSSKTGKHVSEIFKVLANDVQSYRSARKILKINYDMLGKGDLTETRYVLGKIVLDTMTSGIVEDGEYFAAERCHPKTEGTQETGQLQLSDPVDHQSVARKHKRQVSSPPNSERKQEKVKKLKLVGNENVAEQKTSEESQKRVKLSHKVDPSMTKDSMLKKKKYQRKQLIKDWRKTTILSKTSAGQARQLKMDKHNTRTSSQSTVSKNHQEVADNCDMNVDAKTTNKSDLKKEKLHLSPDEDLKDKERRQPHKSKLRQPSLSSLFK*	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g0380	728	MobiDBLite	consensus disorder prediction	557	589	-	-
	Dod02g0380	728	MobiDBLite	consensus disorder prediction	686	716	-	-
	Dod02g0380	728	PANTHER	POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN	12	728	-	-
	Dod02g0380	728	MobiDBLite	consensus disorder prediction	646	728	-	-
	Dod02g0380	728	Gene3D	Beta Polymerase, domain 2	80	230	IPR043519	-
	Dod02g0380	728	SUPERFAMILY	Nucleotidyltransferase	73	225	IPR043519	-
	Dod02g0380	728	MobiDBLite	consensus disorder prediction	540	629	-	-
	Dod02g0380	728	Gene3D	-	231	481	-	-
	Dod02g0380	728	SUPERFAMILY	Poly A polymerase C-terminal region-like	229	380	-	-
	Dod02g0380	728	Pfam	Probable RNA and SrmB- binding site of polymerase A	257	319	IPR032828	-
	Dod02g0380	728	MobiDBLite	consensus disorder prediction	646	685	-	-
	Dod02g0380	728	MobiDBLite	consensus disorder prediction	596	621	-	-
	Dod02g0380	728	PANTHER	POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN	12	728	-	-
	Dod02g0380	728	CDD	NT_ClassII-CCAase	87	225	IPR002646	GO:0003723\|GO:0006396\|GO:0016779
	Dod02g0380	728	Pfam	Poly A polymerase head domain	99	228	IPR002646	GO:0003723\|GO:0006396\|GO:0016779

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g0380	Dod-Chr2	5110897	5120816	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g0380	-		-	ccaj:109801320	936.406

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod02g0380	02	5110897	5120816	Dod02g0380	02	5110897	5120816	ECH