Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0169 ATGTCGGCGATAAAAACTGTTAAGGTCAGTAATGTTTCCTTGGGAGCAACTGACCGAGATATTAAGGAGTTCTTTTCATTTTCTGGTGACATTGAATATGTTGAACTAAAGAGTCATGATGAACGGTCTCAAATTGCTTACGTTACCTTCAAGGATTCACAGGGAGCTGAGACTGCAGTACTGCTATCGGGAGCAACTATAGTTGATCTTTCAGTTACAATAACTCTGGATCCAGATTACCAGCTTCCACCTGCTGCCTTGGCATCATCTGCAAAAGAAAGTAAAGCTCCTGGTGGTGCTGATTCTGCCTTACGGAAGGCAGAGGATGTGGTCTCCAGCATGCTAGCGAAAGGCTTTATATTGGGGAAGGATGCTGTCAACAAAGCAAAGACTTTTGATGAGAAGCACCAGTTATCCTCAACTGCCTCAGCAAAGGTTGTATCTTTTGACCAGAAGATTGGATTGAGTGAGAAAATAAGTGCTGGTGCTACGGCTGTGAGTGATAGAGTTCGAGAAGTTGATCAGAAGTTTCAGGTTTCAGAGAAGACCAAATCAGCATTTGCAGCTGCAGAACAGAAAGTCAGTACTGCTGGTTCTGCGTTAATGAAGAATCGCTACGTACTCACTGGGGCCTCCTGGGTGACGGGTGCATTCAACAAGGTTTCTAAGGCAGCTGGGGAAGTAGGGCAGAAGACAAAAGAGAAAGTAGAGACCGCAGAAGAGCAACAAAAGCGACAAGTGGAAGATCAGTATGCACAGGTCCTTTCTGAGTCCCCAACAAAAGCAGCAGCACCAAACCAGCTTCTTGGACCAAAAGGACAAGCTAGGCCATTCCCGTGTATTCGCCTGACAAAATAA 858 0.4534 MSAIKTVKVSNVSLGATDRDIKEFFSFSGDIEYVELKSHDERSQIAYVTFKDSQGAETAVLLSGATIVDLSVTITLDPDYQLPPAALASSAKESKAPGGADSALRKAEDVVSSMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVVSFDQKIGLSEKISAGATAVSDRVREVDQKFQVSEKTKSAFAAAEQKVSTAGSALMKNRYVLTGASWVTGAFNKVSKAAGEVGQKTKEKVETAEEQQKRQVEDQYAQVLSESPTKAAAPNQLLGPKGQARPFPCIRLTK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0169 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 67 IPR000504 GO:0003723
Dod02g0169 285 CDD RRM_Vip1_like 7 75 IPR034360 -
Dod02g0169 285 SMART rrm1_1 6 75 IPR000504 GO:0003723
Dod02g0169 285 PANTHER BINDING PARTNER OF ACD11 1 3 263 - -
Dod02g0169 285 MobiDBLite consensus disorder prediction 229 285 - -
Dod02g0169 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Dod02g0169 285 MobiDBLite consensus disorder prediction 248 263 - -
Dod02g0169 285 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 3 263 - -
Dod02g0169 285 MobiDBLite consensus disorder prediction 229 247 - -
Dod02g0169 285 SUPERFAMILY RNA-binding domain, RBD 5 77 IPR035979 GO:0003676
Dod02g0169 285 Gene3D - 2 75 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0169 Dod-Chr2 2398279 2402887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0169 - - gmx:100809613 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0169 02 2398279 2402887 Dod02g0169 02 2398279 2402887 ECH