Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0135 ATGGAAGACGCTGTTTCGGAACCACCGAATCAGAATCCTCTTTCCCAAACCCTAGATTCCCCTCAATTGGTCCCTTGCCTCCCCAATCCCAACGTTTCTTTTTCCGGAGACGCCGTTTTCTCCGATCACGCTCTGCGGCCGCCGGCGAAGGTGGCTCCGGCCGCCTCCGTTGCCACCGCCGACGATATCTATTCCGACATTTTCGCTAAGGAAGATGCCGCTGGTGAAGTGCCTTCGAGGAACGAGGCCTATTGCTCCGCGGCTAGGGTGGGAGCTGGGCTTTGGAATCTTGGTAACACGTGCTTTCTGAACGCGATCGTGCAGTGCTTTACGCACACGGTGCCACTAGTGCTGGGTCTTCGATCGTGCAGCCATTCTGTACCTTGCGATGGCAGCGATTGTAGGTTCTGTGTTATTTGTGCCCTCCGCGAGCAGGTTGAATGTTCCTTAGCGGCTACAGGAGGAGTTCTTTCACCTTTGAGGCTTGTTGACAATTTGAACCATTTTTCATCTATGTTTACAAGATACCAGCAGGAGGATGCCCATGAATTTATGCAGTGTGTCTTAGATAAACTTGAAAGGTGTTTTATAGATCTGAAGAAGAATAATAAGAGTTTTGAAGATGGTAATCTAGTAGAGAAAGTATTTGGAGGTCGTTCCATTAGCAAGCTTCGATGCTGTAACTGTGGCCACGATTCTGACACTTATGAGCCACTGATTGACCTGAGTTTAGAGATAGAAAATGTAGATAATCTTCAAAGTGCTCTGGAGTCTTTCACTAAGGTGGAAAATATTGATGATAAGTTTAAATGTGATAGATGCAATGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACACCTTCAATTGCAGCATTTCATTTAAAGAGATTTAAGACAGATGGAACATATGTTGAAAAAATTGATAAACACGTAAATTTCCCGCTGGAGTTGGACTTGCAGCCTTTCACTGTTTCTAATCAAGACAATAATGCACCATTAAAATATGATCTATATGCTGTTGTTGTGCATATTGGATTTTCATCTACGTCAGGGCATTACTTCTGCTTTGTTCGCTCTGCACCAGACACATGGCATAAGTTGGATGATTCAAAGGTTACTGTGGTCTCAGAGGCATATGTCTTGTCTCAGGAAGCATACATATTGTTTTATGCACGACAGGGTACACCATGGTTTTCAGATATTATGGAATCTACAATGCCATGCTTCGGTCCTAGAACTTTGACGACATCTCCTAAGTCTGTCTTAGACACTGTTGACAGCACATATATATCGAATCCTGTGATAGCTGCAAATATTGATAGGAGTGAGGTTAGGGAACCCAAAAAAATTTCTGAGCAGTTTGATTATTCTTGTCGAGAAAGACTTGAGTTGCCTGAGATCAATGATGCTGGAGATGCTTCTCATGACTGCAAACAATTTCCTTCTGGGCTAAATCAGGAAAGTGTTGGTTTGAGTTGGTCTAATGGTACCACCGGTGCCCAAGTGCCAGTTGGGAATGTTGCCACTAAGAATGTTAATGCCACATTCGATGGAAATTGTACTGAAAGTGTTCAGGATAAAAATAAATGCAGTGAGAAAGTTGTTGATTTTGCTGAGGCTGATGGTTTCAATCCTTTAACTCCACCCAGTTCCCCTGCTCCTGATGCTGAAGGTAATTTAGTTTTTCTACTCATTTTTGTGTTTTCACGTATTTCTGTGAATAGGATTTCTTTGTATAACATTCTTTCTCCAGGAAATGTCAGATAA 1776 0.4307 MEDAVSEPPNQNPLSQTLDSPQLVPCLPNPNVSFSGDAVFSDHALRPPAKVAPAASVATADDIYSDIFAKEDAAGEVPSRNEAYCSAARVGAGLWNLGNTCFLNAIVQCFTHTVPLVLGLRSCSHSVPCDGSDCRFCVICALREQVECSLAATGGVLSPLRLVDNLNHFSSMFTRYQQEDAHEFMQCVLDKLERCFIDLKKNNKSFEDGNLVEKVFGGRSISKLRCCNCGHDSDTYEPLIDLSLEIENVDNLQSALESFTKVENIDDKFKCDRCNEEVSMEKQLMLDQTPSIAAFHLKRFKTDGTYVEKIDKHVNFPLELDLQPFTVSNQDNNAPLKYDLYAVVVHIGFSSTSGHYFCFVRSAPDTWHKLDDSKVTVVSEAYVLSQEAYILFYARQGTPWFSDIMESTMPCFGPRTLTTSPKSVLDTVDSTYISNPVIAANIDRSEVREPKKISEQFDYSCRERLELPEINDAGDASHDCKQFPSGLNQESVGLSWSNGTTGAQVPVGNVATKNVNATFDGNCTESVQDKNKCSEKVVDFAEADGFNPLTPPSSPAPDAEGNLVFLLIFVFSRISVNRISLYNILSPGNVR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0135 591 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 93 108 IPR018200 GO:0004843|GO:0006511
Dod02g0135 591 Gene3D Cysteine proteinases 89 400 - -
Dod02g0135 591 SUPERFAMILY Cysteine proteinases 91 395 IPR038765 -
Dod02g0135 591 Pfam Ubiquitin carboxyl-terminal hydrolase 93 393 IPR001394 GO:0004843|GO:0016579
Dod02g0135 591 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 80 422 - -
Dod02g0135 591 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 92 396 IPR028889 -
Dod02g0135 591 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 80 422 - -
Dod02g0135 591 MobiDBLite consensus disorder prediction 1 22 - -
Dod02g0135 591 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 338 356 IPR018200 GO:0004843|GO:0006511
Dod02g0135 591 MobiDBLite consensus disorder prediction 8 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0135 Dod-Chr2 2024575 2028049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0135 93 395 Miscellaneous Gene Families AT4G31670 34.295 4.66e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0135 K11855 - gmx:100806936 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0135 02 2024575 2028049 Dod02g0135 02 2024575 2028049 ECH