Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g0020 ATGAAGAAGAACCGTAGTTTTTCTCAACTCTTTTTCCTGTTCTTGTTGGTGATTGTCTTTGTAACCTTCTCCATAATTTCTGTGGACGCAAGGAAGAATCATATCAAGAAAAAACAACCTAAACGACACAGAGACAACAGCAATGGCCACACTCGAGGCTCGCCTTCTCCATCTCCAGCACCAGCTCCTCTTCCTCATCCAACCCAAATGAACACTTTTGACATTTTGTCCTTCGGTGCAAAGGGCAATGGAATTTCTGATGATTCAAAGGCACTTGTAGCTGCATGGGAAGGTGCATGCAAAGTTTCGGGTGCCACAGTTAAAGTTCCACCAAAACTCAAATTTCTCATCAAGCCCCTTACCTTACAAGGCCCTTGTATGCCTAGCCTTACTCTTCAGCAGATAGATGGAACTCTGTTGGCTCCTCCTGATCCTGAGGCATCTTCTTGGCCGGAGTCCAGTTTGTTCCAGTGGATAAATTTCAAATGGGTGCAGAACTTCACCATTAAAGGCTCTGGCATTGTTGATGGCCAAGGCTCTAACTGGTGGAGCTCCTCAGAATCTTATGATATGCTGGTAAAATCAAGCAACAAACATATTCAAGCTGTAAGATTCTACTCTAGCAACTATGTAACAGTTCGGGATATCAGAATCATAAACAGTCCTCTGTGCCACCTAAAATTTGACTGCTCAAAGGGGATTAAAGTTACTAACATTACAATTTCTTCCCCCGGAAATAGTCCAAATACTGATGGCATTCACTTGCAGAACACACAGGATGTCGAAATTCAGCATTCTGATATTGGAAGTGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCCAATGTTCATGTCCACCACATTAAGTGTGGCCCTGGCCATGGTATAAGTTTAGGAGGATTAGGGAAAGACAAGAGTGTGGCATGTGTCTCTGACATCATCATTGAGGATATCTCAATGAAAAATACTCTATATGGAGCGAGGATCAAAACATGGCAGGGAGGCATTGGTATGGTTAAAAATGTGTCATTTTCCAGAATCCAAGTATATGATGTTATGTTTCCAATAATGATAGACCAATACTATTGTGACAAGCATATCTGCAAGAACCAGACAGGGACTGTGGTGATTTCCGGTGTTAAGTTTGATCAAATAAGTGGGACTTATGCGGTGCAGCCTGTTCATCTAGCTTGCAGCAATTCCATACCATGCACAGACGTTGATTTAACTGATATTCAACTGAGGCCTTCCCTCAAATACCGTCCAGGTTTACAACAAGCTGTTTGTTGGAACTCTTATGGAAAATCACAAGGGCCCTTGCTACCTTCAAGCATTGATTATTGCTTGAGAAGTGGTGGTGGATCAATCAAGAGGATTGCAAGGTCACATGACATTATACCTATCACCTTCACCAACCTTGCAATGGTGTAA 1434 0.4261 MKKNRSFSQLFFLFLLVIVFVTFSIISVDARKNHIKKKQPKRHRDNSNGHTRGSPSPSPAPAPLPHPTQMNTFDILSFGAKGNGISDDSKALVAAWEGACKVSGATVKVPPKLKFLIKPLTLQGPCMPSLTLQQIDGTLLAPPDPEASSWPESSLFQWINFKWVQNFTIKGSGIVDGQGSNWWSSSESYDMLVKSSNKHIQAVRFYSSNYVTVRDIRIINSPLCHLKFDCSKGIKVTNITISSPGNSPNTDGIHLQNTQDVEIQHSDIGSGDDCVSIQTGCSNVHVHHIKCGPGHGISLGGLGKDKSVACVSDIIIEDISMKNTLYGARIKTWQGGIGMVKNVSFSRIQVYDVMFPIMIDQYYCDKHICKNQTGTVVISGVKFDQISGTYAVQPVHLACSNSIPCTDVDLTDIQLRPSLKYRPGLQQAVCWNSYGKSQGPLLPSSIDYCLRSGGGSIKRIARSHDIIPITFTNLAMV* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g0020 477 Pfam Glycosyl hydrolases family 28 106 417 IPR000743 GO:0004650|GO:0005975
Dod02g0020 477 MobiDBLite consensus disorder prediction 34 66 - -
Dod02g0020 477 SUPERFAMILY Pectin lyase-like 66 446 IPR011050 -
Dod02g0020 477 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 457 - -
Dod02g0020 477 Gene3D - 62 451 IPR012334 -
Dod02g0020 477 PANTHER - 16 457 - -
Dod02g0020 477 SMART pbh1 311 332 IPR006626 -
Dod02g0020 477 SMART pbh1 231 257 IPR006626 -
Dod02g0020 477 SMART pbh1 281 301 IPR006626 -
Dod02g0020 477 SMART pbh1 340 361 IPR006626 -
Dod02g0020 477 SMART pbh1 164 185 IPR006626 -
Dod02g0020 477 SMART pbh1 258 279 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g0020 Dod-Chr2 550404 553285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g0020 1 467 Glycoside Hydrolase AT3G26610 61.250 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g0020 K01213 - gmx:100803027 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g0020 02 550404 553285 Dod02g0020 02 550404 553285 ECH