Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3304 ATGTCCGTTTTCCTTCAAAGATCACTTAGGACAAGGAGGTCCAACATTAAACCCCAAATTCAGGGGCTTTCCTCGTTGCTGACAAACTCGTTTGATTCCTTGCATCACAAAAACTTCCGTTTCCAGTTCTCCCACAGCCCTTGGTTGAGTTCAAATTCGCTTGCAGGCGGTAGTTACTGTTATGGTTATGCGTCTCACAGACACCAAGGTGGTGCTGTGTTTCCGACATCCAAATGGGTTCGGTTCTTGGGTTCTGAAGCCGCCGCCGCCACCACCACCCAACACTCGACCTCCGATGGCCTCACGGTCGATGGAATTCTCGCCAACAATTGGAGCATTCTAGACGAGAACGAAGGCGATTGGAAGAGCCATGCCACCGCCATAGCTCAATCTGTTAGTCTTATCAAACGCCGCTTACAGTGGAAGAAATTGAAGGTGAGGTTGGATATGTTATCATCGCAGCTGAATAAGCCGGACCTTTGGGATGATCCTGTGCATGCAGGTAAAATAAGCCGCGAGCATGGATCGCTTATTGGGAAGGTGAAAGAGGTGAATGTGCTGGAGCAGGAGTTACTTGAGCATATTGACATGTTAAAGCTTGCTCGCGAAGAGAATGATGCAGAATTGGAATCGGAATCATTGAAAGCATTGCTCAACATGAGAAGAAATACAAAAGAGAAAGAGCTAGAGGCATTGCTTGTCGGGGAGCATGATTCTTGTTCTTGCTACATTGAGGTTCAGGCTGGAGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTTATGCAGATGTACAAATCATGGGCCCGAAGACGTGGATATAAAGTAACTGTGATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACAATCAAAGTAGATGGTATATTTGCATTTGGATATGCCAAAGCAGAAGTGGGAGTGCACAGGCTGGTGCGTGTATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCTGCTGTAGCAGTAATTCCAATCCTTGGTGATGGATCTGCTCGTGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCGGGTGGCCAACATGTTAATACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCGACTTGCCAGAATGAAAGATCACAACATCGGAATATGGCTTCTGCGATGGCTGTGCTTCAGTGTAGATTAGACCAACTGGAGATGGCGCGCCAGGCTCAGTTGAATGCACAGCATACTCAATCTCTCACTGACATAGCTTGGGGCAGTCAGATACGTAGTTATGTGCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTTCTTGAGGGAGATATAGATGATTTCATCTTGAGCTATCTATCAGCTTCTCTGGATAAAGATGTGGACGATGCTTAA 1467 0.4622 MSVFLQRSLRTRRSNIKPQIQGLSSLLTNSFDSLHHKNFRFQFSHSPWLSSNSLAGGSYCYGYASHRHQGGAVFPTSKWVRFLGSEAAAATTTQHSTSDGLTVDGILANNWSILDENEGDWKSHATAIAQSVSLIKRRLQWKKLKVRLDMLSSQLNKPDLWDDPVHAGKISREHGSLIGKVKEVNVLEQELLEHIDMLKLAREENDAELESESLKALLNMRRNTKEKELEALLVGEHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWARRRGYKVTVMDEMPGEIAGIKRATIKVDGIFAFGYAKAEVGVHRLVRVSPFDSNKRRHTSFAAVAVIPILGDGSARVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHRNMASAMAVLQCRLDQLEMARQAQLNAQHTQSLTDIAWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDIDDFILSYLSASLDKDVDDA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3304 488 Pfam RF-1 domain 346 453 IPR000352 GO:0003747|GO:0006415
Dod01g3304 488 Gene3D Release factor 120 230 - -
Dod01g3304 488 Gene3D - 340 436 - -
Dod01g3304 488 Hamap Peptide chain release factor 2 [prfB]. 117 481 IPR004374 GO:0005737|GO:0006415|GO:0016149
Dod01g3304 488 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 95 486 - -
Dod01g3304 488 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 95 486 - -
Dod01g3304 488 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 360 376 IPR000352 GO:0003747|GO:0006415
Dod01g3304 488 Coils Coil 184 204 - -
Dod01g3304 488 SMART PCRF_a_2 199 309 IPR005139 GO:0006415
Dod01g3304 488 TIGRFAM prfB: peptide chain release factor 2 122 479 IPR004374 GO:0005737|GO:0006415|GO:0016149
Dod01g3304 488 Pfam PCRF domain 145 334 IPR005139 GO:0006415
Dod01g3304 488 SUPERFAMILY Release factor 144 483 IPR045853 -
Dod01g3304 488 Gene3D - 244 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3304 Dod-Chr1 74113109 74116510 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3304 K02836 - gmx:100797427 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3304 01 74113109 74116510 Dod01g3304 01 74113109 74116510 ECH