Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3224 ATGGCGGGGAGTGAAGCCAAAAACGCCAAGCAATCTGGTGGGAAGAAGAAGGAGGTGAAGAAAGAGACTGGTTTAGGACTCACGAATAAGAAGGCTGATAACTTCGGAGAGTGGTATTCCGAGGTTGTTGTTAATGCGGAAATGATTGAGTACTATGACATTTCTGGCTGCTACATTCTGAGGCCTTGGGCAATGGCAATATGGGAGATCATGCAAGGATTTTTTGATCCAGAAATAAAGAAGATGAAAATCAAGAACTGCTACTTCCCTTTATTTGTGTCCCCTGGAGTTTTGGAAAAGGAGAAGGAACACGTTGAGGGATTTGCTCCAGAGGTTGCTTGGGTGACAAAGTCTGGGAAAACCGATTTAGAAATTCCCATTGCTATTCGTCCAACTAGTGAAACTGTCATGTATCCTTACTACTCCAAGTGGATTAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCCTCACCATTCATCAGGAGTCGTGAGTTCCTTTGGCAGGAAGGACACACTGCTTTTGCAACAAAGGAAGAAGCAGATGCTGAGGTTCTTGACATATTGGAATTATATAGACGTATATATGAAGAGTATTTGGCAATTCCTGTCTTTAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAATACTGGCCGTGGCATACAAGGTGCAACTTCTCATTGTCTTGGCCAAAATTTTGCTAAAATGTTTGAGATAAATTTTGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGTACTCGAACTATTGGGGTGATGGTGATGGTTCATGGTGATGACAAGGGATTAGTACTGCCTCCTAAAGTAGCATCAGTCCAAGTTATTGTGATTCCTGTGCCTTACAAAGATGCTGATACTCAAGGAATCTTTGATGCCTGTTCTGCAACTGTCACTACGTTGTGTGAAGCAGGTATTCGTGCTGAGTCAGATTTTAGAGATAACTATTCTCCTGGATGGAAGTATTCACACTGGGAAATGAAGGGTGTTCCTCTTAGGATTGAAATTGGGCCAAAGGATTTAGCAAAAAAGCAGGTTCGTGTTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCTAATTTGGTTGAGGAAGTAAAAAAGTTACTTGATACTATTCAACAGAACCTTTTTGATGTTGCAAAACAAAAACGAGACGAATGCATTCATGTTGTACATACTTGGGATGAATTTGTACAAGCTTTGAACCAGAGAAAAATGATCTTAGCTCCTTGGTGTGATGAGGAGGAGGTTGAAGCAGATGTCAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACACTTTGTAGCCCTTTTGATCAGCCAGAACTCCCAGAAGGTACCAAGTGCTTTGCATCAGGAAAGCCTGCGACGAAGTGGACATACTGGGGCAGAAGTTACTAG 1527 0.425 MAGSEAKNAKQSGGKKKEVKKETGLGLTNKKADNFGEWYSEVVVNAEMIEYYDISGCYILRPWAMAIWEIMQGFFDPEIKKMKIKNCYFPLFVSPGVLEKEKEHVEGFAPEVAWVTKSGKTDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPSPFIRSREFLWQEGHTAFATKEEADAEVLDILELYRRIYEEYLAIPVFKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVTTLCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKKQVRVVRRDNGAKIDIASANLVEEVKKLLDTIQQNLFDVAKQKRDECIHVVHTWDEFVQALNQRKMILAPWCDEEEVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3224 508 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 128 293 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Dod01g3224 508 SUPERFAMILY C-terminal domain of ProRS 430 508 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 Hamap Proline--tRNA ligase [proS]. 28 508 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 Pfam Anticodon binding domain 312 408 IPR004154 -
Dod01g3224 508 CDD ProRS_core_arch_euk 34 295 IPR033721 -
Dod01g3224 508 SUPERFAMILY Class II aaRS and biotin synthetases 33 299 IPR045864 -
Dod01g3224 508 Gene3D - 306 426 IPR036621 -
Dod01g3224 508 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 90 305 IPR006195 -
Dod01g3224 508 SMART ProRS_C_1_2 435 508 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 PANTHER PROLYL-TRNA SYNTHETASE 6 508 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 SUPERFAMILY Class II aaRS ABD-related 300 427 - -
Dod01g3224 508 TIGRFAM proS_fam_I: proline--tRNA ligase 29 508 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 PANTHER PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE 6 508 - -
Dod01g3224 508 Gene3D - 429 508 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 MobiDBLite consensus disorder prediction 1 21 - -
Dod01g3224 508 CDD ProRS_anticodon_zinc 301 508 - -
Dod01g3224 508 Gene3D Bira Bifunctional Protein; Domain 2 28 305 IPR045864 -
Dod01g3224 508 PRINTS Prolyl-tRNA synthetase signature 86 104 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 PRINTS Prolyl-tRNA synthetase signature 167 178 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 PRINTS Prolyl-tRNA synthetase signature 127 138 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 PRINTS Prolyl-tRNA synthetase signature 157 165 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Dod01g3224 508 Pfam Prolyl-tRNA synthetase, C-terminal 435 508 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3224 Dod-Chr1 73167386 73171993 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3224 K01881 - gmx:100782067 986.097