Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod01g3223 | ATGGCTAACCCAACACAACCAAATGTTGGGCTTCCCGGCTCAAACCCAGATAGACAGAGTCTTACCCCTGACAAGGGTCCAATTCCACCTCCTCCAACTTTTGCCGCAGCACCTAGATTTCCTCCACCAACATTGCATTTGCATCAAGAACAGGGTTCTTCCTCTTCTCCTTCAGTTAAACCCCCAAACGTTTTGTCCCCGGCCAATGGGGTTAAAACTGGCAGTCCAGTTCCTCACCTCAGCACCCCTCCCGGGCCTCCTGTTTTTACTTCGCCTGTCCGTCCAGCTGCCATTCCTTTCCGCACTTCGCCTGCATCGCCTCAGCCGCTTGCTTTTTCTTCAGGCTCATCTTTGCCGACATCATCTCCCCCACAATTTTCAAATGGATCGTTTGAGTTGCAGCACCTAGTTTCTGATAGCATAGAGGACCATGTTCCTGCTGGGGAGTCATCCTTTGTTCTTTTCTCAGCTCATAAGGTATTGAAGCAGAAGAAACAAGCTAATGTACCCAGTTTGGGTTTTGGGGCCTTGGTCTCTCCCGGGAGGGAGGTCTCAACAGGCCCTCAGGTTATTCAGCGTGATCCCCATCGCTGTCAAAGCTGTGGAGCTTATGCAAATATCTATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTAATATGTAGGAAACTGAATGGAAGTGATGGTGAGTACATTGGGCATAGCAAGGAAGATCTTCACAGATTTCCAGAGCTATCTTCACCCATGGTTGACTATGTTCAAACTGGGAACAAGGGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCAGTTGTCCTTGTTATAGATGAATGTTTAGACGAACCCCATTTACAGCATCTACAGAGCTCTTTGCACGCTTTCGTTGATTCTCTCCCTCCAACAACTAGACTAGGAATTGTACTATATGGCCGAACTGTATCAGTATATGACTTTTCAGAAGAGTCAATTGCATCTGCTGATGTGCTTCCTGGCGACAAATCACCGAGTCAAGAATCTTTGAAAGGATTGGTTTATGGCACTGGCATATACTTGTCAGCAATGCATGCTTCACTGCCTGTAGCACATTCCATATTTTCATCATTGAGGCCGTACAAGTTGAACATACCAGAAGCTTCGAGGGATCGGTGCCTCGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTGAGGGCCCATCTGCTGATCTGTCCCGAGGGGTGGTCAAAAGGTCAGGGGGCAATAGTAGAATTATTGTTTGTGCTGGTGGACCAAACACTTATGGACCTGGATCTGTTCCTTATTCTTTTAATCACCCTAATTATCCATATATGGAAAAGACAGCATTAAAATCGATGGATAACCTTGGTCGAGAGGCTCATCGACACAATACTGTGGTTGATATTTTATGTGCTGGGACATGTCCTGTAAGAGTTCCTATCTTACAGCCTCTTGCAAAAGCGTCAGGTGGGGTCTTGGTCCTCCATGATGATTTTGGGGAAGCCTTTGGTGTTAATTTGCAGAGGGCATCTGCCAGGTCAGCAGGTTCCCATGGTTTGTTAGAATTGCGCACATCAGATGATATTCTCATAACTCAAGTTGTGGGTCCTGGGGAAGAATCACATGTAGACACCCATGAAACGTTTAAAAATGACACTGCCATTTATATACAAATGCTGAGTGTTGAAGAAACACAGAGCTTCTCTCTCTCCATGGAAACTAAAGGAGATATCAAAAGTGATCATGTCTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTTTCAAGCTGATGTTTCCAGGGTTATTACTGTTAGACTGCCCACAATAGATAGTATTTCGGCATATCTTGAGAGTGTTCAAGATGAAGTAGCTGCTGTCCTCATTGCGAAAAGAACTCTGTTACGAGCGAAAAACCATTCAGATGCAATTGATATGTGGGCAACAATAGATGAAAGAATTAAGGATGTTGCTCTAAAATTTGGCCCTCAAGTCCCCAAATCAAAACTTCACAGGTTCCCAAAGGAGCTTTCTCACTTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATTATTGGCCACGAAGATGAGAGGTCTGTCCTGAGGAACCTGTTTCTGAATGCATCCTTTGATCTGTCACTTCGAATGGTGGCTCCCCGTTGTCTAATGCACAGAGAGAAAGGAACTTTTGAGGAGCTACCAGCCTATGATCTTGCAATGCAGTCTGATGCTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCTGCTTGCCGGACATTGGCTGAAGAGCTGACTGAGTTCCGTTTTCCAGCTCCTCGCATCCTTGCATTCAAGGAAGGTAGCTCCCAAGCTAGATATTTCGTCTCTCGCCTCATACCAGCACACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCGCAACTTAAGTCATTGACATCAGAACAGCGAACAAAGCTGAAAAGCAATTTTGTTCACTTTGATGATCCTAGTTTCTGTGAGTGGATGCGAAGTTTGAAAGTGGTGCCACCAGAACCAAGCTGA | 2625 | 0.4575 | MANPTQPNVGLPGSNPDRQSLTPDKGPIPPPPTFAAAPRFPPPTLHLHQEQGSSSSPSVKPPNVLSPANGVKTGSPVPHLSTPPGPPVFTSPVRPAAIPFRTSPASPQPLAFSSGSSLPTSSPPQFSNGSFELQHLVSDSIEDHVPAGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIGHSKEDLHRFPELSSPMVDYVQTGNKGPGFVPVSDSRMSAPVVLVIDECLDEPHLQHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDFSEESIASADVLPGDKSPSQESLKGLVYGTGIYLSAMHASLPVAHSIFSSLRPYKLNIPEASRDRCLGTAVEVALAIIEGPSADLSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPYSFNHPNYPYMEKTALKSMDNLGREAHRHNTVVDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTAIYIQMLSVEETQSFSLSMETKGDIKSDHVFFQFAIQYSNVFQADVSRVITVRLPTIDSISAYLESVQDEVAAVLIAKRTLLRAKNHSDAIDMWATIDERIKDVALKFGPQVPKSKLHRFPKELSHLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREKGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLKSLTSEQRTKLKSNFVHFDDPSFCEWMRSLKVVPPEPS* | 875 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod01g3223 | 874 | CDD | gelsolin_like | 727 | 818 | - | - | |
| Dod01g3223 | 874 | Gene3D | Sec23/Sec24 helical domain | 613 | 736 | - | - | |
| Dod01g3223 | 874 | SUPERFAMILY | vWA-like | 276 | 508 | IPR036465 | - | |
| Dod01g3223 | 874 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 185 | 258 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Dod01g3223 | 874 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 29 | 623 | - | - | |
| Dod01g3223 | 874 | Pfam | Sec23/Sec24 zinc finger | 195 | 233 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Dod01g3223 | 874 | SUPERFAMILY | Helical domain of Sec23/24 | 625 | 725 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Dod01g3223 | 874 | Gene3D | von Willebrand factor, type A domain | 275 | 520 | IPR036465 | - | |
| Dod01g3223 | 874 | MobiDBLite | consensus disorder prediction | 47 | 63 | - | - | |
| Dod01g3223 | 874 | MobiDBLite | consensus disorder prediction | 23 | 39 | - | - | |
| Dod01g3223 | 874 | Pfam | Sec23/Sec24 trunk domain | 277 | 503 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Dod01g3223 | 874 | Gene3D | Severin | 741 | 838 | IPR029006 | - | |
| Dod01g3223 | 874 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 62 | 874 | IPR037364 | - | |
| Dod01g3223 | 874 | Pfam | Sec23/Sec24 helical domain | 626 | 722 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Dod01g3223 | 874 | Pfam | Sec23/Sec24 beta-sandwich domain | 521 | 612 | IPR012990 | - | |
| Dod01g3223 | 874 | MobiDBLite | consensus disorder prediction | 79 | 93 | - | - | |
| Dod01g3223 | 874 | CDD | trunk_domain | 269 | 512 | - | - | |
| Dod01g3223 | 874 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Dod01g3223 | 874 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
| Dod01g3223 | 874 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 727 | 867 | IPR036180 | - | |
| Dod01g3223 | 874 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 62 | 874 | - | - | |
| Dod01g3223 | 874 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
| Dod01g3223 | 874 | Gene3D | - | 185 | 248 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod01g3223 | - | - | gmx:100781518 | 1550.8 |