Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3177 ATGGGTACAGAGAGGAAGAGGAAGGTGAGCTTGTTCGACGTGGTGGACGACGGTGCCGCTAAGATGGCCAAATCGAATGGCGGCGGCGGCGGCGCTGCAAACAACAACAGCAGCAGCAACAGTCTCATCAATCGGTGGACTGGGAGGCCTTACTCGCAGAGGTACTTTGACATCCTTGAGAAGAGGAAGACCCTCCCTGTTTGGCACCAGAAGCACGAGTTCCTGGAAGCTCTCTCCCAAAACCAGAGTCTCATTCTCGTTGGTGAGACCGGCAGTGGCAAAACCACCCAGATCCCTCAATTTGTTTTGGATGCTGTTGATTTGGAAACACCAGATAAACGCAGGAAGATGATGATTGCATGCACTCAGCCTCGGAGAGTGGCTGCAATGTCTGTTTCCCGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGTGAAGAAGTTGGTTATAGTATCAGATTTGAAGACTGCAGTAGTGCAAAGACAGTTTTGAAGTATCTCACAGATGGTATGCTTTTAAGAGAAGCAATGACAGATCCACTTTTGGAACGATACAAAGTAATTATTCTTGATGAGGCACATGAAAGGACTTTGGCTACAGATGTGCTGTTTGGCCTTCTGAAGGAAGTGCTTAGAAACAGACCCGACTTGAAGTTGGTTGTAATGAGTGCAACTCTTGAAGCTGAGAAGTTTCAGGGATATTTTAGTGGTGCCCCTCTTATGAAAGTTCCTGGAAGGCTACATCCAGTGGAAATTTTTTATACTCAGGAACCTGAAAGAGATTACCTGGAGGCTGCTATTAGGACGGTGGTGCAGATACACATGTGCGAACCTCCTGGAGATATTCTTGTATTTCTGACGGGAGAGGAAGAGATAGAAGATGCATGCCGCAAAATAACTAAAGAAGTTTCAAATATGGGAGAGCAGGTGGGCCCTGTGAAAGTGGTACCTCTATATTCTACTCTCCCCCCAGCTATGCAGCAGAAAATTTTTGAACCACCTCCACCTCCACTTAAGGAGGATGGTCCTCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCTGAAACTTCCTTAACAATTGATGGTATTGTCTATGTTATTGACCCCGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTTGAGTCTTTATTAGTGTCTCCAATATCAAAAGCCAGTGCTCATCAGAGATCAGGACGTGCTGGAAGAACTCAACCTGGGAAATGTTTTAGACTTTATACTGAGAAAAGTTTCAATAATGATCTACAGCCACAGACCTATCCTGAAATTTTGAGATCAAATCTTGCCAATACGGTTCTTACCTTGAAAAAACTGGGTATTGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCGGAGACCTTGATGCGTGCATTGGAAGTTTTGAACTACCTGGGTGCTCTGGATGACGAAGGTAACTTAACAAAGCTGGGTGAGATCATGAGTGAATTTCCCTTGGATCCACAAATGTCAAAGATGCTCGTTGTCAGTCCTGAATTTAACTGTTCAAATGAGATTCTCTCAGTATCCGCCATGCTCTCAGTACCAAATTGCTTTGTCCGGCCTAGAGAGGCACAGAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGACGGAGATCATCTCACACTCTTGAATGTCTACCATGCATACAAGCAAAACAATGAGGATCCCTCTTGGTGTTACGATAATTTTATTAATCAAAGGGCACTGAAGTCGGCTGATAATGTTAGACAACAGCTAGTGCGTATCATGACCCGGTTCAACCTCAAGTTGTGCAGCACTGATTTTAATAGCCGTGACTACTATGTCAATATAAGAAAGGCGATGCTAGCTGGATATTTCATGCAGGTCGCTCATCTGGAGCGCACAGGACATTACTTGACAGTGAAAGACAACCAGGTGGTGCATTTGCATCCATCAAATTGCCTGGACCACAAGCCTGAATGGGTCATCTATAATGAATATGTTCTTACTAGTCGGAATTTTATTCGAACTGTGACAGACATACGTGGGGAATGGTTGGTTGATATAGCACCGCACTACTATGATTTGTCAAATTTTCCACAATGTGAGGCCAAGCGTGTTCTTGAGAGACTTTACAAGAAGAGAGAGAAGGAAAAGGAGGAAGCCAGGAGGCATAAATGA 2190 0.4466 MGTERKRKVSLFDVVDDGAAKMAKSNGGGGGAANNNSSSNSLINRWTGRPYSQRYFDILEKRKTLPVWHQKHEFLEALSQNQSLILVGETGSGKTTQIPQFVLDAVDLETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEVSNMGEQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEDGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFINQRALKSADNVRQQLVRIMTRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARRHK* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3177 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 618 IPR027417 -
Dod01g3177 729 Pfam Helicase conserved C-terminal domain 273 407 IPR001650 -
Dod01g3177 729 SMART helicmild6 290 408 IPR001650 -
Dod01g3177 729 CDD DEXHc_DHX15 53 243 IPR044756 GO:0003724|GO:0005524
Dod01g3177 729 MobiDBLite consensus disorder prediction 29 44 - -
Dod01g3177 729 CDD SF2_C_RHA 248 416 - -
Dod01g3177 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 244 IPR014001 -
Dod01g3177 729 MobiDBLite consensus disorder prediction 23 44 - -
Dod01g3177 729 Gene3D - 247 429 IPR027417 -
Dod01g3177 729 PANTHER ATP-DEPENDENT RNA HELICASE 1 728 - -
Dod01g3177 729 Pfam DEAD/DEAH box helicase 73 229 IPR011545 GO:0003676|GO:0005524
Dod01g3177 729 Gene3D - 453 562 - -
Dod01g3177 729 Pfam Helicase associated domain (HA2) 470 558 IPR007502 GO:0004386
Dod01g3177 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 449 IPR001650 -
Dod01g3177 729 Coils Coil 708 729 - -
Dod01g3177 729 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 620 696 IPR011709 -
Dod01g3177 729 SMART ha2_5 469 559 IPR007502 GO:0004386
Dod01g3177 729 SMART ultradead3 62 253 IPR014001 -
Dod01g3177 729 Gene3D - 15 246 IPR027417 -
Dod01g3177 729 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3177 Dod-Chr1 72645998 72650544 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3177 K12820 - gmx:100807162 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3177 01 72645998 72650544 Dod01g3177 01 72645998 72650544 ECH