Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3172 ATGGCTCCTCCTCCCAATGAACCAGTAACTTGCACCTCGGCACTCCTCAAGTCCGAGTCATTTGAAGACGTTTTTGACTTATCTGATGGAAAGCTTACTGTGAGAGGTGTGCCATTGCTCTCTCAAGTCCCTGAGAATGTGTCTTTCACTTCCTTTTCCTCCATATCCCAATCCTCTGATGCACCACTGTCCTTAGTTCAGCGAGTCCTTGCTACCTCTCACAAAGGTGGCTTCCTTGGGTTCTCCCAGGATGAGCCTTCTGATAGGTTGAAGAACTCCTTGGGTTGCTTCACTGGGAGGGACTTCCTTAGCGTCTTCAGGTTCAAGACATGGTGGTCTACCCAATGGGTTGGAAATTCTGGCTCAGATTTACAAATGGAAACCCAATGGGTTCTCATTGATGTTCCTGAGATCAAGTCCTATGTTATAATCATTCCCATCATTGAAGGAAGTTTTAGGTCTGCCCTCAACCCTGGCTCTGATGAAGGCCATGTCATGATTTGTGCAGAGAGTGGCTCTACCAAGGTGAAAGCATCAAGTTTTGATGCAATTGCCTATGTTCACTTGTGTGAGAATCCTTTCAACTTGATGAAAGAGTCATTCACTGCTCTGAGGGTTCACCTTAACACCTTCAGGCTATTGGAGGAGAAAACTCTTCCAAGTTTGGTTGACAAGTTCGGTTGGTGCACTTGGGATGCCTTCTACTTAACCGTGCAACCCATTGGGATTTGGCATGGGTTGAAGGACTTTGCAGATGCTGGTGTGACCCCAAGGTTTGTTATCATTGATGATGGCTGGCAAAGCATCAACTTGGATGGTGGTGACCCCAAAGAGGATGCAAAGCATCTTATCTTATGTGGTGATCAAATGACTGCAAGGCTTCACAGGCTTGATGAATGTGACAAGTTCAGAAAATACAAAGCTGGCCTCTTCTTGGGTCCTAATGCTCCTTCTTTTGACCCAAAGGATGCCAAGGCATTGATCTCAAAGGGTAATAAACTTGGGCACTTGAAGGGTGAACGTGAACGTGCCATGCAATCTGGAAGCTCCGATTTGGATGATTTTGACTCCAAAATCCAGCATGTGAAAAAAGAAATCGAAGATCTCTTTGGTGGAGCGGAACAAAGCATTGCTCCAGAAGCACAATGTGGAGGTTGCTGTTCCAAAGTGCAGGAATCTGGGATGAAGGCTTTCACAAAGGACTTGAGGACCAAGTTCAAAGGCTTGGATGACATCTATGTATGGCATTCTCTTTGTGGTGCCTGGGCTGGTGTGAGGCCAGGAGCTACACACCTTAATGCCAAACTTGTCCCTTGCATAGTCTCCCCAGGACTTGATGGTACAATGCATGATCTTGCTGTGGTAAGAGTTGTTGAAGGTTCAATTGGGCTTGTTCATCCTGATCAAGCCAATGACTTTTTTGACTCCATGCACTCTCATCTTGCCAAATCTGGTATTACAGGAGTCAAAGTGGATGTTATTCATACTATAGAGTATGTGGGTGAAGAATATGGGGGTAGAGTCGAGCTTGCCAAAGCTTACTATGATGGATTGTCAAACTCTATTGCCAAGAATTTTAATGGGAGTGGAATCATCGCTAGCATGCAGCAGTGCAATGACTTTTTCTACCTGGGAACGAAACAAGTTACCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGACCCCAATGGCGACCCAATGGGAGTGTTCTGGCTACAAGGGGTACACATGATTCACTGCTCCTACAACAGCTTGTGGATTGGCCAAATGATTCAGCCCGATTGGGACATGTTCCAATCGGACCATGTGTGTGCCAACTATCATGCAGCATCAAGGGCCATTTGTGGTGGTCCAATTTATTTGAGTGACAATGTGGGTTCCCATGATTTTGATCTCATTAAAAGGCTTGTGTTCCCTGATGGTACCATTCCCAAATGCATACACTTCCCCCTTCCTACTAGAGATTGCCTTTTCAAGAACCCTTTATTTGACCAGAAAACTGTTCTCAAGATTTGGAACTTCAATAAGTATGGAGGAGTTATTGGGGCTTTCAACTGTCAAGGAGCTGGTTGGGATCCTAAAGAGCACAAGTTCAGAGGTTTCCCTGAGTGTTACAAGCCTGTAGATGGTTCAGTTCATGTAACTGAAGTTGAATGGGACCAGAAGAATGAAACAGCACATATGGGTAAGGCAGAGGAGTATGCAGTGTACCTCAACCAGGCTGAGGAACTTCGCTTGATGACCCCAAAATCTGAACCAATCCAATTTACCATGCAACCTTCCACCTTTGAGCTCTACAGCTTTGTGCCAATCACAAAGTTGAGTAGCAGCAGCATCAAATTTGCACCAATTGGGCTAACAGGAATGTTCAACAGTGGAGGGGCAATTCAAGAATTGGAATATGTAGAAAGTGGTGCTAAGCTTAAGGTTAAAGGTGGTGGGAATTTCCTTGCTTACTCAAGTGAGTCTCCAAAGAAGTTCCAATTGAATGGCTCTGATGTTGCTTTTGATTGGCTTGCTGCTGATGGCAAACTCACAATCAACCTTTCTTGGATTGAAGAATCTGGTGGAGTTTCTGATTTAGCAATTTTGTTCTAG 2601 0.4498 MAPPPNEPVTCTSALLKSESFEDVFDLSDGKLTVRGVPLLSQVPENVSFTSFSSISQSSDAPLSLVQRVLATSHKGGFLGFSQDEPSDRLKNSLGCFTGRDFLSVFRFKTWWSTQWVGNSGSDLQMETQWVLIDVPEIKSYVIIIPIIEGSFRSALNPGSDEGHVMICAESGSTKVKASSFDAIAYVHLCENPFNLMKESFTALRVHLNTFRLLEEKTLPSLVDKFGWCTWDAFYLTVQPIGIWHGLKDFADAGVTPRFVIIDDGWQSINLDGGDPKEDAKHLILCGDQMTARLHRLDECDKFRKYKAGLFLGPNAPSFDPKDAKALISKGNKLGHLKGERERAMQSGSSDLDDFDSKIQHVKKEIEDLFGGAEQSIAPEAQCGGCCSKVQESGMKAFTKDLRTKFKGLDDIYVWHSLCGAWAGVRPGATHLNAKLVPCIVSPGLDGTMHDLAVVRVVEGSIGLVHPDQANDFFDSMHSHLAKSGITGVKVDVIHTIEYVGEEYGGRVELAKAYYDGLSNSIAKNFNGSGIIASMQQCNDFFYLGTKQVTMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWIGQMIQPDWDMFQSDHVCANYHAASRAICGGPIYLSDNVGSHDFDLIKRLVFPDGTIPKCIHFPLPTRDCLFKNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKEHKFRGFPECYKPVDGSVHVTEVEWDQKNETAHMGKAEEYAVYLNQAEELRLMTPKSEPIQFTMQPSTFELYSFVPITKLSSSSIKFAPIGLTGMFNSGGAIQELEYVESGAKLKVKGGGNFLAYSSESPKKFQLNGSDVAFDWLAADGKLTINLSWIEESGGVSDLAILF* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3172 866 SUPERFAMILY (Trans)glycosidases 222 273 IPR017853 -
Dod01g3172 866 Gene3D Aldolase class I 224 637 IPR013785 -
Dod01g3172 866 PANTHER - 1 866 IPR008811 -
Dod01g3172 866 Pfam Raffinose synthase or seed imbibition protein Sip1 25 849 IPR008811 -
Dod01g3172 866 SUPERFAMILY (Trans)glycosidases 393 637 IPR017853 -
Dod01g3172 866 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3172 Dod-Chr1 72577645 72580563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3172 9 866 Glycoside Hydrolase AT4G01970 59.007 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3172 K06611 - gmx:100815922 1390.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3172 01 72577645 72580563 Dod01g3172 01 72577645 72580563 ECH