LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g3149	ATGGGTCCGTCGCGTCGCAACAGCAATGGTCGATCGCCTCTGGTGAATCAACAGCGCCAAATCACCGCTTTCTTCTCAAAATCAAGAGCTTCTTCTCCTTCTCCTTCCCCTTCCCCCATTCTCTCCAATAACCCTAATACACTAAACCCTAACCCTAACCCTAGCCCTTCCCCTCCCACCCCTTCCCCGTCCAACCCCAAACCACAAAACCGCAAGCCTCTCCTTCTCATTGGTACCTCTCCATCGCCCTCCCCTTCTTCTTCCTCTTCTCTCTACGCCAACGACGTCGTCGGCAGAAGGATCAAGGTCTATTGGCCTTTGGATAAAGCCTGGTACGAAGGCACTGTTAAATCCTTCGATAATGTTGCCTCAAAGCATTCGGTTCTATACGACGATGACGAAGAGGAATCTCTCGACCTCTCCAAGGAGAAGATCGAGTGGCTTCACGATTCTTCTTCCTCCGCCCCAAATAAGCTCAAACGGTTGCGGCGCGGTGTTCCCGCTGTTAGGAAGATGGTGATTGAGGACGACGATGTTGAAGAAAGTCCCAAACAACAAGAACAAGATAATGATGGTGATGATTCTAGTGATGAAGATTGGGGGGTGGTTGAGGACGCTGGTGATGAAGAAGAAGATGTGGAGCTGGTGGAAGAAGAGGAGGACGAAGAAGATGATAGTGCAGTGAAGTCTAAAAGAAAGCCAAGCGCGAAGATGGAGCCCAAGAAGCGGAAACTGGGTGGAGCAGAGAAACCGCAGCCTGCAAAAAAGAGCAAAAGCGTCACTGAAGTTGGTGGTGTTAAGGGAGGAGGCTTCAAGTTTTCAATGTTAGAGCCTACGAGTAACTTGGAAATTAAAAAGACATCTAATGGTGCTGACAATGTTGCAAATGGTGATGCCTCTGAAAGATTTGCTGCTCGTGAAGCGCAGAAATTCCGCTTCCTGAGAGAAGATTGCAGAGATGCCAAACGAAGGCGTCCCGGGGATGAAAATTATGATCCAAAAACTCTCTATTTGCCTCCAGATTTTGTTAGGAGTTTGTCAGATGGCCAGAAACAGTGGTGGGAATTCAAGTCGAAGCATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAGCTAGACCTGCAGTATATGAAGGGAGAACAACCCCATTGTGGATTTCCAGAGAGGAACTTCTCAATGAATGTGGAGAAACTCGCTAGGAAGGGTTATCGAGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGTTGGAGCTTCGTCGCAGGGAGAAGGGCTGTAAAGATAAGGTTGTGAGACGTGAAATATGTGCAGTGGTTACAAAAGGCACATTAACTGATGGGGAGTTGCTGTCAGCAAACCCAGAAGCTGCATATTTGATGTCACTGACTGAGAACCATGAAAACAATGCAAATGAAATTTCAGAGCGCATGTATGGTGTCTGTATTGTTGATGTTGCCACAAGCAGAGTCATTCTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGCCTTGTGCTGTATATTGTCTGAGATCAGGCCAGTTGAAATAGTGAAACCTGCTAAAGTGCTCAGTGCTGAAACAGAGAGAGTACTGATGAAGCATACTAGAAATCCTCTCGTCAATGAATTAGTTCCAGTTGTGGAATTTTGGGATGCTGAGAAAACTGTGGAGCAATTGAAGAGAATTTACAGGCACACTAATGATGTTAGTGCTGAAGATAATCAGTTAGGTTGCCTGCCAGATGTTTTGCTAGACCTTGTGAAGACTGGCAATGACAGTAAAAGTGCACTTTCAGCACTAGGCGGTGCTCTGTATTATCTAAAGCAGGCTTTCCTAGATGAGACACTGCTTAGATTTGCACAGTTTGAGTCACTCCCATGTTCTGGTTTCTGTGATCTTGCTTCGAAACCACACATGGTTCTTGATGCAGCAGCCCTGGAGAATCTTGAGATTTTCGAGAATAGCAGAAATGGAGATTCTTCGGGCACTCTGTATGCCCAATTGAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGGCATGGCTTGCAAGACCATTATGTCATGTAGAGTCAATCAAGAACCGCCAGGAAGCTGTTGCAGGTTTAAAGGGGGTTAATTTACCTTATGCACTAGAATTTCGAAAAGCATTATCCAAGCTACCTGACATGGAGCGGTTGCTTGCCCGCATATTCTCCACAAGTGAGGCTAGTGGAAGGAATGCTAATAAAGTGGTTTTGTATGAGGATGCAGCAAAGAAACAGCTGCAAGAGTTTATTTCAGCTCTTCGGGGTTGTGAACTAATGGCACAAGCATGCTCTTCACTTGGTGTCATTTTGAATGATGTCAAATCGAGACAACTTCATCATCTGTTAACACCTGGTGAAGGTCTTCCTGATATCTGCGAGGCTCTAAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCAAATAACTCAGGCCGTGTAATACCTCGAGAAGGAGTTGACATAGAGTATGACTCAGCCTGTAAGTCAGTTAAAGAAATTGAATCCAGTTTGTCAAGGCATCTTAAGGAACAAAGGAAATTACTTGGAGACAAATCAATCACTTATGTCACTATTGGAAAGGATGCATACCTATTAGAAGTGCCAGAAAATTTGCGTGGGAATATTCCTCGGGATTATGAGCTGCGTTCTTCCAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATCAAGAAGTTCTTGAAAGAACTCTCTCAAGCTGAATCTGAAAAGGAGTCCTTGTTGAAAAGTACATTGCAGAGACTAATTGGGCGATTTTGTGAAAATCACACTAAATGGAGGCAGCTGGTGTCTACAACAGCTGAGCTGGATGTTTTGATCAGTTTAGCTATTGCTAGTGACTACTATGAAGGACCAACATGCAGACCAAGTTTCTTAGGCACATTATGCATAAAAGATGCTCCACACCTCTCTGCTAAAAGTTTGGGACACCCTGTTCTTAGGAGTGATACCTTAGGCAAGGGTGCCTTTGTACCCAATGGCATAACCATTGGTGGTCCACATCATGCTAGCTTTATTCTTCTAACTGGTCCTAACATGGGTGGAAAGTCAACTCTCCTTCGCCAAGTTTGCTTGGCTGTAGTTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGTTTTGATTTGTCACCTGTGGACCGAATATTTGTTCGAATGGGTGCCAAAGATAATATCATGGCTGCCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACACGTAATTCATTGGTGGCTCTGGATGAGCTTGGTCGTGGGACCTCAACTTCTGATGGGCAAGCCATTGCGGAATCAGTACTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCCACACATTATCATCGATTAGCTCTCGATTATCACGACGACCCCGAGGTCTCTCTTTGCCATATGGCATGTCAAGTTGGCAGTGGAATGACAGGTGTGGACGAAGTCACCTTCCTTTACAGGCTGACCGCTGGCGCATGCCCCAAGAGCTATGGTGTTAATGTTGCCCGGCTAGCTGGACTTCCGATTTCTGTGCTCCAGAAGGCTGCTGCTAAGTCCAGAGAATTCGAGGCCACCTATGGTAAATGTAGAAATGTGCCTTCTGAAGCAAAGTGTTCAATTCAGGATTGGGATGATGAGGTGATAGTTGTCATGAAAAAATTGAACAAGGCTGCTGCAAATTTGAGTTGCCAGGAAGCCATTTGCGATTGTTCCCTATATGAACTTCAGGATAGAGCAAGAGAACTCCTGCAGCGATGTTAG	3882	0.4511	MGPSRRNSNGRSPLVNQQRQITAFFSKSRASSPSPSPSPILSNNPNTLNPNPNPSPSPPTPSPSNPKPQNRKPLLLIGTSPSPSPSSSSSLYANDVVGRRIKVYWPLDKAWYEGTVKSFDNVASKHSVLYDDDEEESLDLSKEKIEWLHDSSSSAPNKLKRLRRGVPAVRKMVIEDDDVEESPKQQEQDNDGDDSSDEDWGVVEDAGDEEEDVELVEEEEDEEDDSAVKSKRKPSAKMEPKKRKLGGAEKPQPAKKSKSVTEVGGVKGGGFKFSMLEPTSNLEIKKTSNGADNVANGDASERFAAREAQKFRFLREDCRDAKRRRPGDENYDPKTLYLPPDFVRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRREKGCKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMSLTENHENNANEISERMYGVCIVDVATSRVILGQFKDDLECSALCCILSEIRPVEIVKPAKVLSAETERVLMKHTRNPLVNELVPVVEFWDAEKTVEQLKRIYRHTNDVSAEDNQLGCLPDVLLDLVKTGNDSKSALSALGGALYYLKQAFLDETLLRFAQFESLPCSGFCDLASKPHMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKAWLARPLCHVESIKNRQEAVAGLKGVNLPYALEFRKALSKLPDMERLLARIFSTSEASGRNANKVVLYEDAAKKQLQEFISALRGCELMAQACSSLGVILNDVKSRQLHHLLTPGEGLPDICEALNHFKDAFDWVEANNSGRVIPREGVDIEYDSACKSVKEIESSLSRHLKEQRKLLGDKSITYVTIGKDAYLLEVPENLRGNIPRDYELRSSRKGFFRYWTPDIKKFLKELSQAESEKESLLKSTLQRLIGRFCENHTKWRQLVSTTAELDVLISLAIASDYYEGPTCRPSFLGTLCIKDAPHLSAKSLGHPVLRSDTLGKGAFVPNGITIGGPHHASFILLTGPNMGGKSTLLRQVCLAVVLAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAAQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLALDYHDDPEVSLCHMACQVGSGMTGVDEVTFLYRLTAGACPKSYGVNVARLAGLPISVLQKAAAKSREFEATYGKCRNVPSEAKCSIQDWDDEVIVVMKKLNKAAANLSCQEAICDCSLYELQDRARELLQRC*	1294

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	225	251	-	-
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	75	93	-	-
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	146	264	-	-
Dod01g3149	1293	Pfam	MutS domain II	473	625	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	Pfam	MutS domain I	350	462	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	Pfam	MutS family domain IV	844	935	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	1	48	-	-
Dod01g3149	1293	Pfam	MutS domain III	660	975	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	SMART	mutATP5	1035	1227	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	SMART	DNAend	674	1015	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	Gene3D	-	820	951	-	-
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	168	190	-	-
Dod01g3149	1293	Gene3D	DNA repair protein MutS, domain I	305	466	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	Gene3D	-	655	975	-	-
Dod01g3149	1293	SUPERFAMILY	DNA repair protein MutS, domain I	335	458	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	SUPERFAMILY	Tudor/PWWP/MBT	95	136	-	-
Dod01g3149	1293	Coils	Coil	922	942	-	-
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	49	68	-	-
Dod01g3149	1293	SUPERFAMILY	DNA repair protein MutS, domain III	657	981	IPR036187	-
Dod01g3149	1293	Gene3D	-	986	1262	IPR027417	-
Dod01g3149	1293	Gene3D	-	87	146	-	-
Dod01g3149	1293	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	246	1260	-	-
Dod01g3149	1293	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	997	1230	IPR027417	-
Dod01g3149	1293	Pfam	MutS domain V	1039	1229	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	SUPERFAMILY	DNA repair protein MutS, domain II	468	669	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	191	224	-	-
Dod01g3149	1293	Gene3D	MutS, connector domain	471	654	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Dod01g3149	1293	PIRSF	Msh6	2	1274	IPR017261	GO:0006298\|GO:0030983
Dod01g3149	1293	MobiDBLite	consensus disorder prediction	1	93	-	-
Dod01g3149	1293	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	246	1260	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g3149	Dod-Chr1	72378241	72386790	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g3149	K08737		-	gmx:100811104	1920.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g3149	01	72378241	72386790	Dod01g3149	01	72378241	72386790	ECH