Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3119 ATGCAACTGTTCCTGCACTGCTTTCAGAACGTGCTTGCCCACTTCCTGTTCCAACTTCAGGCAAACGGGAAGAGACACATGAAGGGGCTAGTGGCTGTGCTTTTGCTCATTGCATTAAGCACTGCTCTGGAGAGCAATGGAGAAGATAACCTGGAGCCATGTAAACAGAAGACATTGGATGCTAGGCCTCACAGTGTGTCAATCTTGGAATTTGGGGCGGTTGGGGATGGAAAAACATTGAACACATTAGCATTCCAAAATGCTATATTCTATCTCAAGTCATTCACTGACAAAGGTGGTGCTCAACTATATGTTCCATCTGGCCAATGGCTAACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGATGCTACCATCATTGCATCCCAGGATTATGCCCATTGGGATGTCGTGGATTCCCTCCCTTCCTATGGTAGAGGAATTGACGTTCCAGGTGGGAGATATCGCAGCTTGATTTATGGACAGAATTTAAGTGATGTGGTGATTACAGGTGATAGTGGAATTATTGATGGCCAGGGCTCTATCTGGTGGGAGCTGTTCAATTCTCATTCCTTAAATCACAGCCGACCACATCTTGTAGAATTTGTTAATTCTGTTAATGTCACTATTTCCAATTTGACATTTTTAAACTCTCCTTCGTGGGACATACATCCAGTATATTGCAGCAATGTCCAAATTCTGAACATAACAACTCGTACGCCAGCTGAATCACCTTACACAAGTGGTATAGTTCCAGATTCTTCTCAGTATGTTTGCATTGAAAACAGTGACATCAGCAGTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAGTATGGAGTTGCCTATGGAAAACCAACCTCAAGTGTCCACATCAGGGATGTTTACCTACAATCATCATCAGGTGCTGGCCTCGCATTTGGGAGTGAGATGTCTGGTGGTATATCTGATGTAACTGCTGAACAGCTTCATATACATAACTCACATATTGGCATTGAACTGAAGACAACTAGGGGTAGAGATGGCTATATGAAAGGCGTCTTTATTTCTGACGCGGAATTGGAAAACATTGACTTGGGTATCAGCATGACTGGAGACACTGGTTTGCATCCAGATGACAAGTATGATCCAAGTGCACTTCCAGTTGTTGGTAGCATTACTTTTAAGAATATGATTGGTACAAATATCACTGTTGCCGGGAACTTTTCAGGATTAGTTGATTCACCATTCACAAACATATGTCTTTCAAACGTGAATTTTTCTGTCAGTTCTGAGCCATCTTCTTCATGGTTTTGTTCTAATGTAATCGGTTTCTCTGAGGAGGTGTTTCCTGAGCCGTGTCCTGAACTCCAGAGCTCAGAGTCGTCTTCTTGCTTTCCCTCCCTATACTCACTCTCTAGTTATGTCTCAAGCTTATTCGATCATCATCAACAACCACAAGAATCATAG 1470 0.4293 MQLFLHCFQNVLAHFLFQLQANGKRHMKGLVAVLLLIALSTALESNGEDNLEPCKQKTLDARPHSVSILEFGAVGDGKTLNTLAFQNAIFYLKSFTDKGGAQLYVPSGQWLTGSFNLTSHLTLFLERDATIIASQDYAHWDVVDSLPSYGRGIDVPGGRYRSLIYGQNLSDVVITGDSGIIDGQGSIWWELFNSHSLNHSRPHLVEFVNSVNVTISNLTFLNSPSWDIHPVYCSNVQILNITTRTPAESPYTSGIVPDSSQYVCIENSDISSGHDAIVLKSGWDQYGVAYGKPTSSVHIRDVYLQSSSGAGLAFGSEMSGGISDVTAEQLHIHNSHIGIELKTTRGRDGYMKGVFISDAELENIDLGISMTGDTGLHPDDKYDPSALPVVGSITFKNMIGTNITVAGNFSGLVDSPFTNICLSNVNFSVSSEPSSSWFCSNVIGFSEEVFPEPCPELQSSESSSCFPSLYSLSSYVSSLFDHHQQPQES* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3119 489 PANTHER PECTIN LYASE-RELATED 31 469 - -
Dod01g3119 489 PANTHER POLYGALACTURONASE-RELATED 31 469 - -
Dod01g3119 489 SUPERFAMILY Pectin lyase-like 58 458 IPR011050 -
Dod01g3119 489 Pfam Glycosyl hydrolases family 28 161 442 IPR000743 GO:0004650|GO:0005975
Dod01g3119 489 SMART pbh1 322 343 IPR006626 -
Dod01g3119 489 SMART pbh1 294 316 IPR006626 -
Dod01g3119 489 SMART pbh1 210 235 IPR006626 -
Dod01g3119 489 SMART pbh1 260 281 IPR006626 -
Dod01g3119 489 SMART pbh1 351 372 IPR006626 -
Dod01g3119 489 Gene3D - 46 447 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3119 Dod-Chr1 71950120 71954191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3119 27 466 Glycoside Hydrolase AT3G16850 62.132 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3119 - - gmx:100787190 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3119 01 71950120 71954191 Dod01g3119 01 71950120 71954191 ECH
Dod01g3119 01 71950120 71954191 Dod07g0218 07 2774204 2778159 PCT