Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3118 ATGTTAAAGATGATGGAATCTTGCGATTGTATAGAAACACCATATCCCCCGGATGAGCTTCTTGTCAAATATCAGTATATCTCGGATGTTCTTATTGCTCTTGCATATTTCTCAATTCCTGTGGAGCTGATCTATTTTGTTCAGAAGTCTGCCTTCTTCCCGTATCGATGGGTGCTTATGCAGTTCGGCGCATTTATTGTTCTTTGCGGAGCAACTCATTTCATTAACCTGTGGACATTCTCTATGCACTCCAAAGCTGTTGCCGTGGTGATGACGGTCGCCAAAGTCTCGTGTGCTATTGTGTCGTGTGCGACTGCTCTCATGCTTGTCCACATTATTCCTGATCTGTTGAGTGTCAAAACTCGTGAATTGTTCCTTAAGAACAAGGCCGAAGAGCTTGATAGGGAGATGGGTCTTATTCTTACTCAGGAAGAAACAGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACGCTGGACAGGCATACCATTCTCAAGACTACTCTTGTTGAGCTGGGTAGGACTTTAGGCTTGGAGGAATGTGCATTATGGATGCCATCGAGGAGTGGTCCGGATCTGGAACTTTCCCATACTTTAACCTACCATGTACAGGATAGGCTTACTGTGGGAACAAACCTTCCCATTGTCAGTGAAGTTTTCAATAGCCCTCGAGCTATGCGGATACCACATGCCTGTCCACTGGCCAGTGGGATCAGGCCTCCTGTGGGTACATATATGCCGTCTGAAGTTGTTGCTGTCCGGGTGCCTCTTCTACATCTCTGGAACTTCCAAATTAATGATTGGCCTGATCTTTCAGCAAAAAGCTATGCAATAATGGTTCTCATCCTCCCTCCTGATAGTGCTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTTGTTGCTGACCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCAATGCAAGCTCGTGATCAACTCATGGAACAGAATAAGGATTTAGACTTAGCTTGGCAGAAGGCAGAGACGGCAATTCATGCTCGCAATGATTTCCTTGCTGTCATGAACCATGAAATGAGGACACCAATGCATGCAATAATAGCATTGTCATCCCTTCTTTTGGAGACTGAACTGACCCCAGAGCAGAGGGTTATGTTAGAGACAGTATTGAAGAGTAGTAATGTTCTGGCAACACTTATCAATGATGTTCTTGATCTTTCTCGACTAGAAGATGGTAGCCTTGAATTAGAAATGGGAAAGCTCAATCTTCATGGTGTTCTGGGAGAGGTCGTTGAACTGATAAAGCCTATAGCATCTGTTAAAAAATTGCCTATTACTTTAATTATTGCACCTGATCTGCCCATGTATGCCATTGGTGATGAAAAACGGCTTATGCAAACTCTTTTAAATGTTGTGGGTAATGCTGTTAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGCATCTGTTCCAAAACCAGACTCTTTACAGGATCGGCAACCTTCCGAGTTATACCAATCATCAACTGAGGGTCATTTCTACTTACAAGTGCAGGTTAAGGATTCTGGATGTGGCATTCCTCCACAAGATATTCCACATCTCTTTACCAAATTTGCTCAGTCTCGGAGTGGACCAGCTCGACCCACCAGTGGTGCGGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAATCTAATGGGAGGTCACATATGGATTGAGAGCGAGGGCACTGACAAAGGAAGCACAGCTACATTCATAGTCAAGCTAGGTATTTGTGGCAATGCAGATGCAGTGGATCGTCAAGCTGCCAACAGAGGGCAAGCGTATAGTGGAAGTGGAGGCCTAGCTAGATATAAAGCTTTTGCCAAAGATGATGAAGGCAAAGGTTTTTCTACTCGACGCAATCAAAGAAGTTTTTAA 1923 0.4394 MLKMMESCDCIETPYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSMHSKAVAVVMTVAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGPDLELSHTLTYHVQDRLTVGTNLPIVSEVFNSPRAMRIPHACPLASGIRPPVGTYMPSEVVAVRVPLLHLWNFQINDWPDLSAKSYAIMVLILPPDSARKWRDHELELVDVVADQVAVALSHAAILEESMQARDQLMEQNKDLDLAWQKAETAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMLETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKLNLHGVLGEVVELIKPIASVKKLPITLIIAPDLPMYAIGDEKRLMQTLLNVVGNAVKFTKEGYVSIRASVPKPDSLQDRQPSELYQSSTEGHFYLQVQVKDSGCGIPPQDIPHLFTKFAQSRSGPARPTSGAGLGLAICKRFVNLMGGHIWIESEGTDKGSTATFIVKLGICGNADAVDRQAANRGQAYSGSGGLARYKAFAKDDEGKGFSTRRNQRSF* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3118 640 Gene3D - 142 313 IPR029016 -
Dod01g3118 640 CDD HATPase_EvgS-ArcB-TorS-like 465 590 - -
Dod01g3118 640 Gene3D - 314 412 - -
Dod01g3118 640 SUPERFAMILY GAF domain-like 165 315 - -
Dod01g3118 640 PRINTS Bacterial sensor protein C-terminal signature 534 544 IPR004358 GO:0016310|GO:0016772
Dod01g3118 640 PRINTS Bacterial sensor protein C-terminal signature 516 530 IPR004358 GO:0016310|GO:0016772
Dod01g3118 640 PRINTS Bacterial sensor protein C-terminal signature 551 569 IPR004358 GO:0016310|GO:0016772
Dod01g3118 640 SMART gaf_1 162 322 IPR003018 GO:0005515
Dod01g3118 640 Gene3D - 413 595 IPR036890 -
Dod01g3118 640 SMART HKATPase_4 460 592 IPR003594 -
Dod01g3118 640 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 460 590 IPR003594 -
Dod01g3118 640 PANTHER ETHYLENE RESPONSE SENSOR 1 5 639 - -
Dod01g3118 640 Coils Coil 318 338 - -
Dod01g3118 640 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 5 639 - -
Dod01g3118 640 SMART HisKA_10 348 413 IPR003661 GO:0000155|GO:0007165
Dod01g3118 640 Pfam GAF domain 162 312 IPR003018 GO:0005515
Dod01g3118 640 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 335 414 IPR036097 GO:0000155|GO:0007165
Dod01g3118 640 CDD HisKA 346 409 IPR003661 GO:0000155|GO:0007165
Dod01g3118 640 ProSiteProfiles Histidine kinase domain profile. 355 592 IPR005467 -
Dod01g3118 640 Pfam His Kinase A (phospho-acceptor) domain 349 413 IPR003661 GO:0000155|GO:0007165
Dod01g3118 640 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 402 590 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3118 Dod-Chr1 71921763 71926526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3118 5 595 Miscellaneous Gene Families AT2G40940 75.973 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3118 K14509 - gmx:100802569 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3118 01 71921763 71926526 Dod01g3118 01 71921763 71926526 ECH