Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3114 ATGGCATCTGCTCCTTCCATGTCAGTTTCTTTAGAATGCGTCAATGCATGCAATCTAGGGAGAGGGGAAGGAAGTGGAAGATATGACTGTAATCTTCTGTCGTGTGCGTGGAAAGCTCCAAGGGTCCTTACTGGATTTCTTGCGAGCACGGCGCATCCTCATCAGTCTTCACCCGTGTGGAAAGGGCGAAATGGGAGAAGGAACCGGTATAATTTTGGATGTAAAGCATTTAATACAGTTAGTTCTTATCCCGATGAAGTGCCTGATATCGTACTTCTTGAAGGAATCTCTAGATCTATCTTGTCTCAAGTTGCTACTCGAAGATGGCAATTACATTGTTCGTCAGCCATCTCATTGGATACTGCCAATGAGGTTACCCCTGAAAGCTTGTGGGAGGATCTAAAACCTGCGATCTCATACCTATCCCCTAACGAACTGGAATTAGTCCATAATGCTCTTATGTTGGCGTTTGAAGCTCATGATGGTCAGAAAAGGCGCAGTGGTGAGCCCTTCATCATTCATCCAGTGGAGGTTGCACGTATTCTTGGAGAACTTGAACTTGACTGGGAATCAATTGCTGCTGGGTTACTTCATGACACAGTTGAGGATACAAATGTTGTTACCTTTGAAAAGATTGAGGAGGAGTTCGGAGCTACTGTGCGCCACATTGTGGAAGGGGAAACCAAGGTGTCAAAGCTTGGAAAGTTGAAGTATAAGAATGACAATGATTCCATTCAAGATGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCAATGACAGAGGAGGTTCGTGTTATTATTGTCAAATTAGCTGACAGGTTACATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGGCTAGCATTGCAATGGAGACATTACAGGTATTTGCCCCATTGGCAAAGTTACTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTATCATTTATGTATACAAATGCTGAAGATTATGCTAAGGTTAAGAGAAGAGTTGCAGAACTATACAAAGAACATGAGAAAGAACTTCAGGAGGCAAACAAAATATTGGTGAAGACAATCCAAGATGATCAGTTCTTAGACCTTCTGACTGTTAAAACTGAAGTCCTTGCCGTGTGTAAAGAGCCTTACAGTGTCTATAAGGCTGTTCTCAAATCAAAAGGATCAATCAATGAAATTAACCAAATTGCACAGCTTCGTATTATCATTAAACCAAAGCCGTGCGTTGGGGTTGGGCCTTTATGCAACCCACAGCAGATTTGCTATCATGTCCTGGGGTTGGTCCATGGAATCTGGACCCCTATTCCTAGATCGGTGAAGGATTACATTGCAACCCCTAAACCAAATGGCTACCAAAGTCTTCATACAACTGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTATCACTGGCTTGGTTGGAAGTGCTTTGCCTAGTAGTAAAAACTCCAGAGGGAAGACAGTGTGTCTTAACAATGCCAACATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGGGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTTGATACAATTACAAGAGATCTTCTAGGAAGTCGTGTCTTTGTGTTTACGCCGAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTAATCGACTATGCTTATATGATACACACTGAAATTGGCAACAAGATGGTAGCGGCAAAGGTCAACGGTAATCTTGTTTCTCCTGCGCGTGTACTTGCAAATGCAGAAGTAGTGGAGATTATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAGCAATGGTTGCAACATGCTAAAACACGTAGTGCAAGACACAAAATAATGAAGTTTCTAAGGGAGCAAGCTGCTCGTTCTGCTGCTGATATCACTACAGAAGCAGTCAATGACTTTGTCACTGATTCTGATGGTGATAGTGAATCTGAAGGACCGTCAAATGGTACCAGTTGTTCCAAACCTATGTGGGGGAAAATGTTCGTGAATGGAGCGGAGATACCAACTCTGGAAAGAAACGAGGTTGTCTGCCAAAGTAAGAATGGTAGTGTTTGGACCCCCAAGGTCAATGGAAAACATAATAAACATGTGCATCATGTAAGTTTGGAAAGCAAAGAGCAGATGTTACTGCAGGGAAACCACCTGACCAAGTTAATTCAAGCTAACGTTCCAAGATATAAGGAAGTCCTGCCTGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCCACTTGGCACAATATAGAAGGGCACTCTATCCAATGGTTGTGTATCGTATGCATAGACAGAAGAGGCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCAGGCATAATCATATGTTCTTGTATGGCTGAGATTGATGGAGGAAGGGGAATGGGTGTCATGTTATTTCACGTAGAAGGAAATCTGGAAAACTTGGTTAGTGCTTGCACTAGAGTAGATCATATACTAGGAGTTTTAGGGTGGTCTACCGGTTGCAGCTGGCCAAGCTTGGTGGAAGACAGTGACATTCTCGAGTGCTAG 2655 0.4282 MASAPSMSVSLECVNACNLGRGEGSGRYDCNLLSCAWKAPRVLTGFLASTAHPHQSSPVWKGRNGRRNRYNFGCKAFNTVSSYPDEVPDIVLLEGISRSILSQVATRRWQLHCSSAISLDTANEVTPESLWEDLKPAISYLSPNELELVHNALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFEKIEEEFGATVRHIVEGETKVSKLGKLKYKNDNDSIQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQASIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELQEANKILVKTIQDDQFLDLLTVKTEVLAVCKEPYSVYKAVLKSKGSINEINQIAQLRIIIKPKPCVGVGPLCNPQQICYHVLGLVHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFITGLVGSALPSSKNSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPARVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVTDSDGDSESEGPSNGTSCSKPMWGKMFVNGAEIPTLERNEVVCQSKNGSVWTPKVNGKHNKHVHHVSLESKEQMLLQGNHLTKLIQANVPRYKEVLPGLESWQAQKIATWHNIEGHSIQWLCIVCIDRRGMMAEVTTALATAGIIICSCMAEIDGGRGMGVMLFHVEGNLENLVSACTRVDHILGVLGWSTGCSWPSLVEDSDILEC* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3114 884 CDD NT_Rel-Spo_like 378 488 IPR007685 GO:0015969
Dod01g3114 884 Coils Coil 329 360 - -
Dod01g3114 884 Pfam Region found in RelA / SpoT proteins 378 494 IPR007685 GO:0015969
Dod01g3114 884 SUPERFAMILY HD-domain/PDEase-like 136 324 - -
Dod01g3114 884 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Dod01g3114 884 SUPERFAMILY Nucleotidyltransferase 328 499 IPR043519 -
Dod01g3114 884 Gene3D Hypothetical protein af1432 125 324 - -
Dod01g3114 884 Gene3D - 558 633 IPR012675 -
Dod01g3114 884 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
Dod01g3114 884 SUPERFAMILY ACT-like 797 863 IPR045865 -
Dod01g3114 884 CDD TGS_RSH 566 624 IPR033655 -
Dod01g3114 884 SMART hd_13 167 287 IPR003607 -
Dod01g3114 884 Pfam HD domain 152 309 - -
Dod01g3114 884 MobiDBLite consensus disorder prediction 676 697 - -
Dod01g3114 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 884 - -
Dod01g3114 884 CDD HDc 169 300 IPR003607 -
Dod01g3114 884 SUPERFAMILY TGS-like 552 624 IPR012676 -
Dod01g3114 884 Gene3D - 797 864 - -
Dod01g3114 884 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Dod01g3114 884 MobiDBLite consensus disorder prediction 676 698 - -
Dod01g3114 884 CDD ACT 798 853 - -
Dod01g3114 884 Pfam TGS domain 565 624 IPR004095 -
Dod01g3114 884 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3114 Dod-Chr1 71897661 71904874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3114 181 496 EF-hand Containing Proteins AT3G17470 29.217 1.78e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3114 K00951 - gmx:100786637 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3114 01 71897661 71904874 Dod01g3114 01 71897661 71904874 ECH