Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3112 ATGTCTCTCTTCCTTTCCTATCGTTCCTCTTCTTATCCTTCTCTGTTTCTTCTCCTTTCTATCATCTCTACTACTCTGCTCCTTTGTGACTCCTCCTTCCAGCCCTTGCACCACCGCCACCCTCGCTTTGCCACTCACAACTACAGAGATGCTCTCACCAAGTCCATCATCTTCTTCGAAGGCCAGAGGTCTGGGAAGCTCCCTTCTCACCAGAGGATGTCTTGGAGAAAAGACTCTGCTCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTACGACGCAGGGGACAATGTGAAGTTCGGTTTTCCGATGGCCTTCACAACCACCATGCTCTCTTGGAGTGTTATTGAGTTTGGTGGGGTCATGAAAGGCGAGTTGCAGAACGCCAGAGAGGCCATTCGCTGGGGCACCGATTACCTTCTCAAAGCTACTGCACATCCCGGCACCATTTATGTTCAGGTGGGAGATGCTAAGAAGGATCATGCTTGTTGGGAGAGGCCTGAGGACATGGATACTCCAAGAAGTGTATACAAGATAGATAGGAACAACCCTGGTTCAGATGTGGCCGCGGAAACTGCTGCTGCTCTTGCTGCTGCTTCTCTTGTTTTCAAGAAAACTGACCCTGCATACTCCAAAACTTTAGTTAGGAGGGCTATTAGTGTTTTTCAGTTTGCTGACAAGTACAGGGGAGACTACAGTAATGGCTTGAAGGCCGTTGTATGCCCCTTCTATTGCTCTTACTCTGGCTATCAGGATGAGCTTTTGTGGGGTGCTGCTTGGCTGCACAAGGCTACAAAGAACCCAATGTACCTAAACTACATTAAGGTTAATGGACAGACCCTTGGGGCTGCAGAGTCTGACAACACCTTCGGCTGGGATAACAAGCATGTTGGGGCAAGGATACTTCTTTCTAAGGAATTTCTAGTTCAAAAGGTGCAATCCCTTCATGACTACAAGGGTCACGCGGACAACTTCATCTGTTCTCTCATTCCTGGGTCCCCTTTCTCTTCCTCCCAATACACCCCAGGTGGGCTTCTGTTCAAGATGAGTGATAGTAACATGCAATATGTCACGTCTACTTCGTTCCTACTACTAACCTACGCTAAGTACTTGACCTCAGCTCACATGGTCGTTAACTGTGGTGGAACCACTGTTACCCCAAAGAGGCTCCGTTCAATTGCCAAAAAACAGGTGGATTACTTGCTAGGTGACAACCCTTTGAAGATGTCCTACATGGTGGGGTATGGTGCAAGGTACCCACGAAGGATACACCACAGGGGCTCATCTCTACCGTCCATTGCTGTACATCCTGGCAAGATCCAATGCTCGGCAGGGTTCAGTGTGATGAACTCACAAACCCCTAACCCCAACATTCTGGTGGGTGCAGTTGTTGGAGGGCCGGATCTGCATGATAGGTTCCCTGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCTACTTATATCAACGCACCCCTTGTAGGTGCACTTGCTTATCTCGCGCACTCATTTGGCCAGCTCTAG 1536 0.4902 MSLFLSYRSSSYPSLFLLLSIISTTLLLCDSSFQPLHHRHPRFATHNYRDALTKSIIFFEGQRSGKLPSHQRMSWRKDSALSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPGTIYVQVGDAKKDHACWERPEDMDTPRSVYKIDRNNPGSDVAAETAAALAAASLVFKKTDPAYSKTLVRRAISVFQFADKYRGDYSNGLKAVVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQTLGAAESDNTFGWDNKHVGARILLSKEFLVQKVQSLHDYKGHADNFICSLIPGSPFSSSQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHMVVNCGGTTVTPKRLRSIAKKQVDYLLGDNPLKMSYMVGYGARYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQTPNPNILVGAVVGGPDLHDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3112 511 SUPERFAMILY Six-hairpin glycosidases 45 509 IPR008928 GO:0005975
Dod01g3112 511 PANTHER ENDO-1,4-BETA-GLUCANASE 15 511 - -
Dod01g3112 511 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 477 495 IPR033126 -
Dod01g3112 511 Pfam Glycosyl hydrolase family 9 48 501 IPR001701 GO:0004553|GO:0005975
Dod01g3112 511 Gene3D - 44 507 IPR012341 GO:0005975
Dod01g3112 511 PANTHER ENDOGLUCANASE 17 15 511 - -
Dod01g3112 511 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 404 430 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g3112 Dod-Chr1 71856258 71858928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g3112 18 507 Glycoside Hydrolase AT1G02800 76.566 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3112 K01179 - gmx:100777718 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3112 01 71856258 71858928 Dod01g3112 01 71856258 71858928 ECH