Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g3080 ATGGCAATGGCTGTGGTTGCAGTTGGTGTGCAGCAACAGTTACTGAGCCTCTCTGAATCAAAGAAGTGTTGGAATAATAGGACAAGGCCATGCCTTGCTCCTTACAGCGCTATTCTCTTATTACGCTCACACAAAAGGATTCAGTTTTCAGTGATTTCATGCTCTTCTTCTTCTTCTTCCTCCTCACCACAGTCACAGACCCCAGAAGCTGAGACTCAAACTGAAACTGCCGAATCCTGCGTCAATTTGGGTCTTCAGCTCTTCTCCAAAGGAAGGAAAAAAAATGGACTATTTCAGGTTAAAGATGCTTTGGCCCAGTTTGAAACGGCGCTTTCCTTGAATCCCAATCCTATGGAGGCCCAAGCTGCTCTCTATAACAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCTGCTGATTGTCTCCGTACCGCTCTGAGGGAATACAACCTAAAATTTGGTACAATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAGCTACAAGAAGAGGCCAGGCTGGGTGGGGAAGATATTGGCTACAGTTTTCGAAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTCAGGAAATTCTTTTATGCAGCTTTGACAGCTGCTGCAGGAATATCATTGTTCTTGACTGTGCCCAGGCTGTTTCGTGCTATTAAAGGTGGCGATGATGCTTCTGATCTATGGGAAACTGCTGGGAATGCTGCCATTAACATTGGAGGCATTGTTGTTCTTGTGGCATTATTTTTCTGGGACAGTAAAAAAGAGGAGGAACAGCTTGCACAAATATCCAGAGATGAGACCCTGTCAAGGTTGCCTTTGCGCCTATCAACTAATCGCATAGTTGAACTTGTACAGCTACGGGACACAGTTAGGCCAGTTATATTAGCAGGAAATAAGGAAACAGTGTCTTTGGCTTTGCAAAGAGCAGAAAGATTTCGTACTGAGCTCCTTAGGCGTGGTGTACTGTTAGTTCCTGTCATATGGGGAGAAGGTAAGGAAACAAAATTTGAGAAGAAAGGTTTTGGTCATCTGCAAAAGGCTGCTGAAGCTCTTCCATCCATTGGGGAAGATTTTGAGAAGCGAACGCAGTCCATAACAGCAAAATCAAAGTTGAAAGCTGAAATCAGGTTCAAGGCTGAAGTTGTATCACCAGCAGAATGGGAACAGTGGATAAGAGATCAGCAGAAGTCTGAAGGAGTTACTGTTGGTGAAGATGTGTACATAATACTGCGCTTAGATGGGCGGGTTCGGAGATCAGGGAAAGGTATGCCTGACTGGCAGCAAATTGTGAGGGAGCTGCCTCCAATGGAAGCATTTTTAAGCAAGCTGGAACGATGA 1389 0.4485 MAMAVVAVGVQQQLLSLSESKKCWNNRTRPCLAPYSAILLLRSHKRIQFSVISCSSSSSSSSPQSQTPEAETQTETAESCVNLGLQLFSKGRKKNGLFQVKDALAQFETALSLNPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRKFFYAALTAAAGISLFLTVPRLFRAIKGGDDASDLWETAGNAAINIGGIVVLVALFFWDSKKEEEQLAQISRDETLSRLPLRLSTNRIVELVQLRDTVRPVILAGNKETVSLALQRAERFRTELLRRGVLLVPVIWGEGKETKFEKKGFGHLQKAAEALPSIGEDFEKRTQSITAKSKLKAEIRFKAEVVSPAEWEQWIRDQQKSEGVTVGEDVYIILRLDGRVRRSGKGMPDWQQIVRELPPMEAFLSKLER* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g3080 462 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 5 462 - -
Dod01g3080 462 Gene3D Tetratricopeptide repeat domain 57 170 IPR011990 GO:0005515
Dod01g3080 462 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 5 462 - -
Dod01g3080 462 MobiDBLite consensus disorder prediction 55 75 - -
Dod01g3080 462 Pfam Low psii accumulation1 / Rep27 192 268 IPR021883 -
Dod01g3080 462 SUPERFAMILY TPR-like 74 150 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g3080 - - gmx:100784188 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g3080 01 71498191 71502120 Dod01g3080 01 71498191 71502120 ECH